Mohammad Abbasi Email and Phone Number
Highly motivated bioinformatician with a strong foundation in biomedical engineering and a passion for translating research into real-world applications. Possesses expertise in leveraging machine learning and data analysis techniques to extract valuable insights from complex biological datasets. Experienced in leading and collaborating on multidisciplinary research projects, contributing to publications in top-tier journals and presentations at international conferences. Demonstrated leadership skills through co-founding a non-profit organization fostering innovation in the biotech sector. Eager to contribute to a dynamic research team and advance scientific understanding through innovative bioinformatics solutions.
Caris Life Sciences
View- Website:
- carislifesciences.com
- Employees:
- 1477
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Analyst, Digital Pathology OperationsCaris Life SciencesTempe, Az, Us -
Brand AmbassadorProteintech GroupTempe, Az, Us -
Co-Founder & Co-Managing DirectorNucleate Arizona Sep 2022 - PresentPhoenix, Arizona, United States- Spearheaded the launch of Nucleate Arizona, a pivotal non-profit initiative designed to catalyze biotech entrepreneurship among students and professionals.- Build and maintain strong relationships with key stakeholders, including investors, industry experts, and academic institutions, to support Nucleate's mission and its members' ventures.- Orchestrate high-impact events that bring together industry leaders, investors, and academic pioneers to stimulate collaboration and innovation in the biotech sector.- Champion fundraising efforts, successfully securing essential funding to sustain and grow the organization's reach and impact. -
Doctoral StudentArizona State University Aug 2021 - PresentTempe, Arizona, United States- Pioneered a novel biomarker discovery approach using unsupervised feature learning from scRNA-seq data, streamlining the identification of key indicators for neuroimmune states.- Led a multidisciplinary team in a groundbreaking project mapping neuroimmune responses post-brain injury, employing spatial transcriptomics and high-resolution MERFISH microscopy.- Synthesized and communicated complex research findings to the scientific community through presentations at conferences and publications in top-tier journals. -
Visiting ResearcherArizona State University Jun 2020 - Aug 2021Tempe, Arizona, United States- Led a team of 2 undergraduate students in analyzing the Allen Brain Atlas (ABA) data and collaborated on GitHub- Organized, imputed, and feature engineered 20,000 gene expression images of ABA data using Pandas library in CSV format- Reduced dimensionality of the data using these Unsupervised Feature Learning methods: o PCA, KernelPCA (with polynomial, RBF, and sigmoid kernels), SparsePCA, and ICA o Dictionary Learning, NMF (including Graph-Regularized non-Negative matrix factorization), and Sparse Filtering o Implemented L1 and L2 sparsity objectives in Neural Nets in PyTorch- Identified Neuroanatomical regions in dimension-reduced data using such clustering techniques: o K-means, Agglomerative, DBSCAN, and OPTICS- Achieved 15% improvement in clustering accuracy (Mutual Information score) of the dimension reduced ABA data compared to the historical average -
Bioinformatics InternVir Biotechnology, Inc. Jun 2023 - Aug 2023- Designed and developed a comprehensive pipeline for integrating, batch-correcting, and analyzing multiple transcriptomic datasets to identify novel biomarkers of infectious diseases and predict disease states.- Utilized advanced bioinformatics and machine learning tools and libraries, including Scanpy, Seurat, and SciKit-Learn, in Python and R programming languages, computed using AWS S3, EC2, and RSWB.- Collaborated with a multidisciplinary team to understand project requirements, tailor the pipeline to specific research objectives, document the pipeline development process, and ensure seamless adoption. -
Machine Learning Research InternBarrow Neurological Institute May 2022 - Jul 2022Phoenix, Arizona, United States- Aggregated and prepared Radiomics data from brain MRI images, enabling machine learning analysis.- Developed and tuned Convolutional Neural Network models to segment Vestibular Schwannoma tumors in brain scans, achieving 5% higher accuracy than published models. -
Visiting ResearcherNorthern Arizona University Sep 2019 - May 2020Flagstaff, Arizona Area- Closely collaborated with 3 graduate students in Italy to compute Wall Shear Stress (WSS) from 4D-Flow MRI images of 100+ patients- Generated a mathematical model to combine 4D-Flow MRI data with Computational Fluid Dynamics (CFD)- Attained 10% furtherance in WSS accuracy and identified regions of high risk in the patients
Mohammad Abbasi Education Details
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Bioengineering And Biomedical Engineering -
Biomedical Engineering -
Mechanical Engineering
Frequently Asked Questions about Mohammad Abbasi
What company does Mohammad Abbasi work for?
Mohammad Abbasi works for Caris Life Sciences
What is Mohammad Abbasi's role at the current company?
Mohammad Abbasi's current role is Analyst, Digital Pathology Operations.
What schools did Mohammad Abbasi attend?
Mohammad Abbasi attended Arizona State University, Politecnico Di Milano, Sharif University Of Technology.
Who are Mohammad Abbasi's colleagues?
Mohammad Abbasi's colleagues are Tom Horton, Zack Brown, Kevin Yeung, Kartee Johnson, Brandon D. Bowman, Mba, Taruvinga Sabe, Sal Vasquez Jr.
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Mohammad Abbasi
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Mohammad Abbasi
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