Aaron Brooks

Aaron Brooks Email and Phone Number

Bridging biology and computation @ Generate:Biomedicines
Aaron Brooks's Location
Albuquerque, New Mexico, United States, United States
Aaron Brooks's Contact Details

Aaron Brooks personal email

n/a
About Aaron Brooks

Scientist and leader with a track record of transforming data into insight. I build tools, processes and teams to structure, integrate and distill biological data into formats for stakeholders to make effective decisions. A few notable accomplishments include:- Founded a team that innovates approaches to curation, characterization and communication of information about best-in-class genetic parts. Identified DNA yielding ~30-fold performance improvement.- Developed software packages and visualization tools to identify "hits" in high-throughput CRISPR-based gene editing experiments. - Harnessed synthetic and evolutionary biology to understand how genome organization shapes its function- Architected robust data processing pipelines for processing and managing large-scale, high-throughput, multi-omic biological data- Developed ensemble-learning approaches to infer biological mechanisms from -omic scale data

Aaron Brooks's Current Company Details
Generate:Biomedicines

Generate:Biomedicines

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Bridging biology and computation
Aaron Brooks Work Experience Details
  • Generate:Biomedicines
    Principal Scientist, Computational Biology
    Generate:Biomedicines Oct 2024 - Present
    Somerville, Massachusetts, Us
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  • Ginkgo Bioworks, Inc.
    Design Group Lead (Associate Director), Genetic Parts Curation
    Ginkgo Bioworks, Inc. Jan 2023 - Aug 2024
    Boston, Ma, Us
    - Built a team that innovates approaches to curation, characterization and communication of information about best-in-class genetic parts- Leveraging machine learning and AI to make biology easier to engineer- Fine-tuning DNA foundation models for multiple, application-specific tasks
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  • Inscripta, Inc.
    Staff Scientist, Data Science
    Inscripta, Inc. Jun 2022 - Dec 2022
    Pleasanton, California, Us
    - Developed a software ecosystem for analysis and interpretation of selection experiments using highly-multiplexed, CRISPR-engineered cell libraries.- Worked across the organization, with experimentalists, project managers, software engineers and senior leadership, to establish end-to-end customer workflows.- Helped internal and external customers transform high-dimensional selection data into insights, resulting in 3 publications and 3 patent applications.
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  • Inscripta, Inc.
    Sr. Data Scientist Ii
    Inscripta, Inc. Dec 2020 - Jun 2022
    Pleasanton, California, Us
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  • Embl
    Research Scientist
    Embl Jun 2019 - Dec 2020
    Heidelberg, De
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  • Embl
    Postdoctoral Fellow, Eipod
    Embl May 2015 - May 2019
    Heidelberg, De
    Steinmetz group, Genome Biology Unit
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  • Institute For Systems Biology
    Postdoc
    Institute For Systems Biology Aug 2014 - Mar 2015
    Seattle, Washington, Us
    Baliga lab
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  • Institute For Systems Biology
    Phd Graduate Student
    Institute For Systems Biology Jul 2009 - Aug 2014
    Seattle, Washington, Us
    • Gene regulatory network (GRN) inference• Microbial physiology• Big data analytics• Statistical modeling• Machine learning• Systems and synthetic biology
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  • Santa Fe Institute
    Summer School Participant
    Santa Fe Institute Jun 2011 - Jun 2011
    Santa Fe, Nm, Us
    The annual Complex Systems Summer School provides an intensive introduction to complex behavior in mathematical, physical, living and social systems for graduate students and postdoctoral fellows.
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  • University Of New Mexico
    Nih Prep Scholar
    University Of New Mexico 2007 - 2008
  • University Of New Mexico
    Undergraduate Researcher
    University Of New Mexico 2002 - 2007

Aaron Brooks Skills

Genomics Systems Biology R Cell Molecular Biology Python Data Analysis Synthetic Biology Microbiology Bioenergy Machine Learning Big Data Statistical Data Analysis Mathematical Modeling Complexity Theory Evolutionary Biology Systems Theory Network Science

Aaron Brooks Education Details

  • University Of Washington
    University Of Washington
    Cell/Cellular And Molecular Biology
  • The University Of New Mexico
    The University Of New Mexico
    Biochemistry
  • The University Of New Mexico
    The University Of New Mexico
    Political Science And Government
  • Rio Rancho High School
    Rio Rancho High School

Frequently Asked Questions about Aaron Brooks

What company does Aaron Brooks work for?

Aaron Brooks works for Generate:biomedicines

What is Aaron Brooks's role at the current company?

Aaron Brooks's current role is Bridging biology and computation.

What is Aaron Brooks's email address?

Aaron Brooks's email address is aa****@****pta.com

What schools did Aaron Brooks attend?

Aaron Brooks attended University Of Washington, The University Of New Mexico, The University Of New Mexico, Rio Rancho High School.

What skills is Aaron Brooks known for?

Aaron Brooks has skills like Genomics, Systems Biology, R, Cell, Molecular Biology, Python, Data Analysis, Synthetic Biology, Microbiology, Bioenergy, Machine Learning, Big Data.

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