Aaron Berlin Email & Phone Number

Kennebunk, ME, US

Boulder, CO, US

San Francisco, CA, US

* Continued original duties after acquisition * Contributed to leadership strategy in larger organization

• Managed software organization including Bioinformatics, Cloud Operations, Web Applications, Systems Engineering, Verification and Clinical Development teams
• Led the development of clinically regulated (IEC 62304) and RUO oncology software systems designed for liquid biopsy and tumor samples run on NGS technology
• Scaled organization from 10 to over 90 engineers and analysts and implemented a matrixed reporting and execution structure
• Participated in drafting of PMA submissions, FDA pre-submission meetings and compliance audits

• Ensured the on time release of multiple validated high quality commercial software products
• Provided expert analysis and training for the sales and field support team

• Mentored a team of bioinformaticians and statisticians to design custom tools and analysis
• Architected a novel de novo assembly approach for fusion calling increasing speed and sensitivity
• Developed machine learning algorithm to distinguish Lymphoma ABC and GCB subtypes

Designed a comprehensive database of known oncogenic fusions (quiver.archerdx.com)

Cambridge, MA, US

• Serve as point person providing expert analysis and manipulation of genomic sequencing data for groups and collaborators across the Broad Institute.
• Responsible for administration and oversight of technology and development projects.
• Develop and implement novel analytical tools on the most challenging datasets.
• Design novel visualizations to summarize and describe analysis results
• Present data and experimental results to collaborating scientists.
• Supervise and provide training and expertise to junior team members.

Cambridge, MA, US

Performed de novo assembly used classic and NGS methods on genomes ranging in size from viruses to mammals. Developed a high throughput viral pipeline including the creation of novel methods to assemble, characterize and visualize viral populations.

Cambridge, MA, US

While working on the computer finishing team I focused on resolving and confirming Sanger sequenced BACs. In addition to finishing sections of the Mouse, Dog and various fungal genomes, I developed computational tools increasing efficiency and accuracy of the finishing process. By combining computer and laboratory methods I was able to resolve complex.

As a freelance database developer I helped local small businesses to increase efficiency and data integrity while decreasing redundancy. My largest project was for a campus food service provider. I created a custom solution, which tracked and streamlined all aspects of the business including scheduling, billing, payroll and inventory. Overall the solution.

Ms, Bioinformatics

Ba, Biology