I am a computational biologist in Dr. Debora Marks’ lab at Harvard Medical School where I apply machine learning and statistics to protein engineering problems. I am pursuing a PhD in Applied Mathematics from Harvard University. I hold a MS in Environmental Science and Engineering from Harvard and a BS in Chemical Engineering from UC Berkeley.
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Machine Learning ScientistSkyhookBoston, Ma, Us -
Ai ScientistAbiologics Dec 2023 - PresentBoston, Massachusetts, United States- Development of computational methods to predict and understand how noncanonical amino acids influence biologically relevant properties.- Close collaboration with experimentalists and computationalists to perfect a closed-loop platform for data integration, visualization, computational generation, and experimental testing. -
Graduate Research AssistantHarvard University Sep 2017 - Oct 2023Boston, Massachusetts, United StatesDebora Marks' Lab: Researching Protein Engineering, DL models, Statistical corrections of sequence model bias.Thesis: Optimizing Protein Fitness and Function with Sparse Experimental Data- Developed statistical methods to improve unsupervised sequence model predictions and incorporate labels with evolutionary models. Designed methods and conducted all computational tests and experiments. Method significantly improves unsupervised model predictions and introduces methods to design multi-functional proteins. - Collaborated with National Renewable Energy Lab and Innovative Genomics Institute (IGI) at UC Berkeley and UCSF for 2 publications ( + 1 pending) -
Graduate Teaching AssistantHarvard University Jan 2018 - May 2019Cambridge, MassachusettsIntroduction to Environmental Science and Engineering (Harvard ESE6)- Led laboratory sessions to investigate environmental samplesThe Technology, Economics, and Public Policy of Renewable Energy (Harvard Business School ESPP90S)
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Graduate Internship/Collaboration With Global Modeling And Assimilation OfficeNasa - National Aeronautics And Space Administration Jun 2018 - Dec 2018Goddard, Md• Collaborated between Jacob lab and NASA GEOS-5 model development to evaluate chemistry and dynamics of new 132 vertical level atmospheric general circulation model• Used python to analyze NetCDF output from GEOS-5 simulations• Identified GEOS-5 model bugs, physical inconsistencies and collaborated with NASA scientists to fix and ensure valid model performance and output -
Undergraduate Research AssistantUniversity Of California, Berkeley May 2016 - May 2017Berkeley, CaDr. Lisa Alvarez Cohen's Lab• Worked on Anammox carbon-fixation pathway project and used ion-exchange chromatography and high pressure liquid chromatography to monitor levels of nitrite, nitrate, ammonia and carbon sources• Cultivated anaerobic Anammox bacteria on anaerobic media • Worked with qPCR, 16s ribosomal RNA, and electrolysis to quantify cell culture species in Anammox consortium• Designed and built a graphite cathode/anode bioelectrical stimulation reactor for Anammox -
Undergraduate Research AssistantUniversity Of California, Berkeley Jan 2016 - Aug 2016Berkeley, Ca• Installed and monitored CO2 probes to help a graduate student conduct CO2 mixing study in a temperature controlled chamber• Developed and built a design project to test for geometry of air plumes above a heat source• Used MATLAB to conduct data analysis and graphs -
Education And Outreach InternTelegraph Green Initiative Fund Jul 2015 - Jun 2016Berkeley, Ca• Partnered with and pitched ideas to Telegraph Avenue, Berkeley food vendors, and district board members to hold sustainability events • Collaborated with businesses to publicize and conduct promotional discount events for customers who use less one-time-use packaging.• Reached out to students and community members to hold large-scale annual educational waste week activities including industrial composting facility demonstrations for students and trash vs. composting demonstrations for the Berkeley public
Ada Shaw Education Details
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Applied Mathematics -
Environmental Science -
Chemical Engineering
Frequently Asked Questions about Ada Shaw
What company does Ada Shaw work for?
Ada Shaw works for Skyhook
What is Ada Shaw's role at the current company?
Ada Shaw's current role is Machine Learning Scientist.
What schools did Ada Shaw attend?
Ada Shaw attended Harvard University, Harvard University, University Of California, Berkeley.
Who are Ada Shaw's colleagues?
Ada Shaw's colleagues are Phunuru Sherpa, Amy-Chayil Roughton.
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