Amina Echchiki Email & Phone Number

Lausanne, Vaud, Switzerland

Documentation and monitoring of products from conception to release.Key tasks:- design and review specifications for product conception and implementation- identify and assess risks and develop mitigation strategies- write and execute tests (TPs and UAT) on core features- structure, maintain and contribute to the company's technical documentation- gather and analyze customer feedback

Lausanne, Vaud, Switzerland

Contact point for any matter related to the protection of personal data.Key tasks:- monitor incidents and breaches, develop scenarios, maintain policies - administration of customer data and files, process data exports and other GDPR-related requests- monitor Prod data copies for internal needs (e.g. infrastructure updates)

Lausanne, Vaud, Switzerland

Delivering the best customer experience for the company's users.✔ Technical Administrator (IAM):- set up and configure custom Apps on SmartGene's IDNS Service platforms - configure products to meet specific customer requirements, integration and performance- manage customer accounts and contracts (EU+CH)✔ Customer support:- ensure timely and accurate solutions to enhance user satisfaction and product reliability- provide helpdesk support (live / remote): diagnostics, troubleshooting- scientific and technical requests handling (CRM)- active interaction with customers, facilitating productive exchanges- organize trainings, present features to customers and leads✔ Management assistant:- technical marketing: document software products, conception of user manuals- technical sales: including invoices, offers, tenders (EU+CH)- project management: meeting minutes, project charters, backlog refinement, sprint planning

Vaud, Switzerland

Running a self-financed business can be hard, my role is to make it easier.My dynamic nature and tendency to seek constant stimulation motivated me to invest in Lémania Cargo Express (family company). We're a local moving company providing multiple services: moving and transportation, furniture assembly, cleaning services, storage units, vehicles rental. ✔️ Administrative / Financial assistant:- strategic planning of agendas- quotations, invoicing, customs clearing and declarations (CH/EU)- maintenance of website, social media, marketing - basic financial accounting, monthly cash flow✔️ Business associate:- management of vans for rental - responsible for deep cleaning services (e.g. end of stay, end of construction)- second-hand goods seller / reconditioning (e.g. furniture, vehicle part)

Bulle, Fribourg, Switzerland

Covid Task Force Fribourg (Bulle, Fribourg, Mobile clinics)✔️ Laboratory technician (vaccines)- Preparation and optimization of COVID-19 vaccine doses, ready-to-inject syringes (IM) following aseptic techniques and cantonal guidelines ✔️ Medical administrative assistant- Reception and registration of patients on site (OneDoc)- Creating and maintaining medical records (Cantonal hotline)- Generate Swiss COVID certificates (OneDoc/BAG)

Montreux, Vaud, Switzerland

After my time in academia, I decided to give my career a fresh boost. Engaging in more hands-on lab work allowed me to see immediate results and feel a tangible sense of accomplishment, which was incredibly rewarding especially during pandemic times.Covid Task Force Vaud (EMCC Montreux, HRC Rennaz), certification by CHUV.✔️ Laboratory technician (vaccines)- Managing a team of technicians specialized in vaccine preparation- Preparation and optimization of COVID-19 vaccine doses, ready-to-inject syringes (IM) following aseptic techniques and cantonal guidelines - Stock management and surveillance, supply planning

Lausanne Area, Switzerland

Main tasks included:- developing assembly and analysis pipelines (bash, python)- code versioning and documentation (git, snakemake, markdown)- algorithm development and statistical analysis (python, R)- database management (SQL/mySQL) and system administration (Linux)- writing reports, scientific papers, presenting research- benchmarking bioinformatics software (bash, python)- software installation and maintenance (Linux server)- bioinformatics support to wet-lab biologists (python, R, bash)✔ Researcher (PhD student)My main project focused on the assembly and analysis of the Mediterranean amphioxus (Branchiostoma lanceolatum) genome and transcriptome. In collaboration with the Amphiencode consortium, we built a reference genome with a chromosome-level resolution (hybrid assembly on HiC contact maps), curated its annotation, used orthology-based and expression-based validation methods to get a realistic estimate of protein-coding genes in this organism. Decided to call it quits before the final exam for personal reasons. ✔ Bioinformatician In parallel, I participated to several other genomics projects in genome evolution, gene and genome duplication, structural genomics

✔ Teaching assistant for practicals- development, testing, teaching of hands-on classes (BSc / MSc level)- supervision and examinationCurriculum:- Sequence a Genome (bash)- Bioinformatics for Genomics (R, bash)- Introduction to Bioinformatics (python, web)- Introduction to Programming (python)- Programming for Bioinformatics (python)- Introduction to Data Analysis (R)- Botany (systematics, taxonomy, plant determination)

Lausanne Area, Switzerland

Completed a comprehensive training "Train the Trainer" (by SIB / ELIXIR), specifically designed to enhance my teaching skills, pedagogical techniques and best practices in adult education.✔ Bioinformatics trainer- manage and engage a diverse audience of professionals (academia, pharma, public and private)- content creation: bioinformatics teaching material (theory and hands-on)- course planning, development and presentation- supervision and examination Curriculum:- Snakemake for Reproducible Analyses / PyPharma (@Basel - SIB / Roche / UniBas)- Unix for Life Sciences (@Lausanne - SIB)- Bioinformatics of Long Reads Sequencing (@Bern and @Zürich - SIB / UZH / UniBe)- Comparative Genomics: Duplication of genes and genomes, expression (Remote - SIB / Unil)- Long reads applied to plant genome assembling (@Lausanne - Unil / SIB / StarOmics)- RNA-seq analysis for population genomics (@Bern - SIB)- Advanced Python for life scientists (@Lausanne - SIB / CUSO)

Lausanne Area, Switzerland

✔ Ontology development and curation- anatomy, devlelopment, life stage mapping in animals (json, obo)- built ontologies for non-model species- built custom composite metazoan ontologies based on Uberon✔ Biocuration of expression data for database integration- queried databases (NCBI-GEO, SRA, ArrayExpress) to fetch selected experiments- annotated expression data using ontologies for anatomy and developmental stages- in-depth curation of GTEx data/metadata for compliance and inclusion in BgeeDB- created documentation and managed versioningWork selected for presentation at Biocuration 2016 (Geneva)Poster #104 "Transcriptomics big data curation, sharing and re-analysis challenges: example of GTEx data integration into Bgee"

Lausanne Area, Switzerland

I first discovered bioinformatics during my Bachelor's and was intrigued by the ability to manage data and resources to process data and answer biological questions. I volunteered for a full-immersion summer internship in the SIB and was accepted. Project: analyze the distribution of putative positive selection sites in Selectome protein databaseMain tasks:- query public databases (UniProtKB, Prosite, PDB) with web & CLI tools (Ensembl, BioMart, Blast)- scripting (bash, perl), software install & configuration (Linux)- reporting, presentation

Phd Student / Postgrad Education, Bioinformatics, Unfinished

Focus on: Bioinformatics, computational biology, genomics and transcriptomics, assembly, functional analysis. Extra credits in: Advanced.

Accountant / Comptable

Comptabilité générale PE / PME, opérations, bouclement, rémunération, analyse ▸ Brevet Canton Vaud

Master Of Science (Msc), Bioinformatics, Molecular Life Sciences, 5.8

Focus on: Bioinformatics, transcriptomics. Extra credits in: advanced data analysis and programming Master project: Using new long read.

Bachelor Of Science (Bsc), Biology/Biological Sciences, General

Focus on: Molecular biology. Extra credits in: Data analysis, biostatistics, programming. Project: Significance of genetic polymorphism.

Maturità Scientifica, Piano Nazionale Informatica

Focus on: Fundamental sciences ▸ Students representative ▸ Regional-level competition in combat sports, chess, orienteering ▸ Volunteer.