Andreas Kraemer Email & Phone Number

Redwood City, Ca

Responsibilities include research, development, and productization of algorithms and methods that operate over biological networks and genomic data​, driving innovations for Ingenuity Pathway Analysis (IPA) and Variant Analysis (VA) products. In particular, leading design and implementation of statistical algorithms and other features available in VA (e.g. statistical association filters, pedigree inference, ancestry prediction, druggable pathways), as well as developing and prototyping causal analysis algorithms for IPA (e.g. Pathway Activity Analysis).[IPA is a web-based application to interpret biological data that has been broadly adopted in the life science research community. VA is a widely used tool to identify causal variants in human sequencing data.]

Redwood City, Ca

Contributed to and provided leadership for numerous projects involving product features of Ingenuity Pathway Analysis (IPA) and Variant Analysis (VA), back-end algorithms, as well as scientific services for customers. Among others:Led development, prototyping and publication of IPA causal analysis algorithms (Upstream Regulator Analysis, Mechanistic Networks, Causal Network Analysis) partly in collaboration with a pharma customer.Led design and implementation of statistical association filters, copy number analysis, and biological network algorithms in VA.Led interdisciplinary hypothesis algorithm and visualization teams in the course of a multi-year project aimed at broad-spectrum, host drug target discovery in the context of infectious diseases (in collaboration with USAMRIID).

Research and development of 3D molecular similarity search algorithms involving chemical feature-based pattern matching and a fragmentation approach for sampling of molecular conformations; also performed molecular dynamics simulations of proteins.

Mainz, Germany

Research and development involving atomistic simulation (DFT, MD, QM/MM) to predict optical and structural properties of defects in glass and glass ceramics.

Stanford, Ca

Research in condensed matter physics involving Quantum Monte Carlo simulations.

Goettingen, Germany

Berlin. Germany

Ph.D., Theoretical Physics

Ms (Diploma), Physics