Bioinformatics Systems Analyst
Developing tools for management and curation of genetic sequence metadataContributing to the discovery novel viral genomes, their hosts, and biogeographyCurating the Genomes Online (GOLD) database
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Alex Thomas is listed as Graduate Student at UC Berkeley, Department of Environmental Science, Policy, and Management based in Berkeley, California, United States. AeroLeads shows a matched LinkedIn profile for Alex Thomas.
Alex Thomas previously worked as Bioinformatics Systems Analyst at Doe Joint Genome Institute and Affiliate at Lawrence Berkeley National Laboratory. Alex Thomas holds Doctor Of Philosophy (Ph.D.), Environmental Science, Policy, And Management from University Of California, Berkeley.
My passion is landscape ecology. I am deeply interested in the patterns and processes of ecological systems. Specifically I am most interested in the distribution of microbial communities and their relationship with their environment. From trudging through mud collecting soil samples to sitting in front of computer all day analyzing data, I am willing to learn and utilize whatever tools are necessary to pursue this interest.
Listed skills include Data Analysis, Time Management, Technical Writing, Statistics, and 29 others.
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Walnut Creek, Ca
Developing tools for management and curation of genetic sequence metadataContributing to the discovery novel viral genomes, their hosts, and biogeographyCurating the Genomes Online (GOLD) database
Berkeley, California
Initial exploration of Earth Microbiome Project (EMP) metadata. Setting up a PostGIS database to house EMP metadata, perform spatial queries and connect to additional GIS and statistical analysis software.
Boulder, Co
Explore, screen and report potential issues in the Earth Microbiome Project metadata. Demonstrate potential utilization of Geographic Information Systems (GIS) and third party data sets to expand existing metadata. Develop a prototype web application in R to query GIS expanded metadata and visualize selections on environmental maps and ordination.
Greater Seattle Area
Developing a multivariate classification tool for lakes/ponds in Mount Rainier National ParkUtilizing long term survey data and modeled environmental data in GIS Producing a technical report and manuscript for peer reviewed publication
Develop a multivariate tool to classify zooplankton communities and water quality data in lakes and ponds in Mount Rainier National Park and assess impacts of climate change
Assisted with the study of the forest reclamation project at the TransAlta Coal Mine in Centralia, Wa.
Assisting Sally Brown and graduate students with field sampling, lab analysis, and data entry. Research focuses on greenhouse gas emissions from biosolids and compost.
Pursuing my interests in soil microbial landscape ecology under the advisement of Dr. Jill Banfield. My work will focus on the Department.
Activities and Societies: UW Chapter of Society for Ecological Restoration, Xi Sigma Pi Honors Society, Undergraduate Representative.
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Alex Thomas is listed as Graduate Student at UC Berkeley, Department of Environmental Science, Policy, and Management.
Alex Thomas is based in Berkeley, California, United States.
Alex Thomas has worked for Doe Joint Genome Institute, Lawrence Berkeley National Laboratory, University Of Colorado Boulder, U.S. Geological Survey (Usgs), and University Of Washington School Of Forest Resources.
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Alex Thomas holds Doctor Of Philosophy (Ph.D.), Environmental Science, Policy, And Management from University Of California, Berkeley.
Alex Thomas is listed with skills including Data Analysis, Time Management, Technical Writing, Statistics, Teamwork, Community Outreach, Research, and Volunteer Management.
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