Anatoly Vasilyev Email & Phone Number

Vienna, At

Vienna, Austria

Vienna, Vienna, Austria

Here at Myllia, I'm involved in a very broad range of exciting projects and topics, including:- Single cell RNA-seq data analysis from CRISPR screens (using STAR & Seurat)- Analysis of many other various NGS datasets (using a large variety of tools)- Biomage analysis: cell segmentation & signal quantification (in python)- Implementation of superior sgRNA design algorithm using machine learning models- Implementation of multiplex PCR primers design pipeline for targeted… Show more Here at Myllia, I'm involved in a very broad range of exciting projects and topics, including:- Single cell RNA-seq data analysis from CRISPR screens (using STAR & Seurat)- Analysis of many other various NGS datasets (using a large variety of tools)- Biomage analysis: cell segmentation & signal quantification (in python)- Implementation of superior sgRNA design algorithm using machine learning models- Implementation of multiplex PCR primers design pipeline for targeted scRNA-seq readouts- In silico protein mutagenesis & phylogenetic analysisCore techs: R, python, Linux and everything around it, including a lot of bash.I prefer R for general data analysis (the data.table way) & plotting, and I prefer python for image analysis and more production-oriented pipelines. Show less

Vienna, Austria

In Logicx I was employed as a Full-stack Developer mostly involed in business line applications.Core techs/skills: .net, .net-core, c#, microservices, APIs, databases, data scienceApart from business line, I participated in some R&D projects: - Predictive Maintenance- NLP (receipts text recognition & text parsing & analysis)- Image analysis: recognition of railway infrastructure elements on photos (using TensorFlow)

Moscow, Russia

In Knomics, my primary role was Data Scientist. At the same time I was heavily involved in various client-centric software projects.Core techs/skills: python, R, linux, bash, Amazon Web Services, architecture, biology, metagenomics, bioinformatics, SCRUMBelow is a description of several key projects where I was involved:1. https://atlas.ru/microbiome - a human gut microbiome test which helps users discover the bacteria present in their gut and explore their various… Show more In Knomics, my primary role was Data Scientist. At the same time I was heavily involved in various client-centric software projects.Core techs/skills: python, R, linux, bash, Amazon Web Services, architecture, biology, metagenomics, bioinformatics, SCRUMBelow is a description of several key projects where I was involved:1. https://atlas.ru/microbiome - a human gut microbiome test which helps users discover the bacteria present in their gut and explore their various properties. My role here was senior developer & software architect.2. https://biota.knomics.ru/ - online service for exploratory analysis of human gut metagenomes. Our big project with Skolkovo. A web-service which has QIIME pipeline behind and further data analysis in R. Intended to be used by scientists or people who have metagenomic data. Again my role here was senior developer & software architect.3. Human gut microbiome related text-mining - mining info in huge amounts of scientific texts about human gut microbiome. Techs included are spaCy, word2vec, doc2vec, machine learning pipeline. Show less

Moscow, Russia

We were developing software that helps banks automate business processes. I was a GWT (Google Web Toolkit) developer.

Moscow, Russia

We were developing an AI system for stocks trading. One of the highlights is that we used Scrum development methodology.

Moscow, Russia