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Computational biologist with over five years of industry experience in bioinformatics, building and working extensively with large, real-world research and investigational-use datasets. Highly motivated to make translational discoveries with exponential impacts on clinical outcomes and patient well-being. Thrive in roles that require deep, data-driven collaborations with different departments and or external biopharmaceutical partners.
Lifecanvas Technologies Inc.
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Data ScientistLifecanvas Technologies Inc. Jul 2023 - PresentCambridge, Massachusetts, UsLCT is a technological creator and end-to-end solution provider of rapid 3D shielded-tissue clearing and imaging, including specialized tissue processing, light-sheet microscopy, and software-analytics + data storage products, as well as exploratory CRO services.‣ Designed and deployed backend image loading and interface features for SmartAnalytics® all-inclusive 3D processing, registration, and analysis product within a SPRINT-frameworked team of software engineers.‣ Drove development of accelerated computing for algorithmic steps in live image processing on full-stack SPIM acquisition. Extended image processing into PyTorch framework for GPU and Machine Learning applications.‣ Supervised nine-step sample-processing and analysis automated workflow running distributed docker packaging on in-house cluster.
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Senior Research Associate | Computational DiscoveryFoundation Medicine Jul 2021 - May 2023Boston, Massachusetts, UsFoundation is the market leader in precision medicine diagnostics. Provides cancer patients and physicians with the comprehensive genomic molecular insights needed to prescribe the top targeted/IO therapies and empowers biopharma partners to develop the treatments of tomorrow.‣ Led data/visualization programming and reporting on 130 analyses for chief biopharma partner using custom-built python and R code.‣ Spearheaded bioinformatic research on 13 active manuscripts with collaborators across academia and industry as principal analyst.‣ Implemented validation and oversaw all documentation of FoundationCore®: a 750k patient dataset of 300 specimen/variant features.‣ Enhanced FoundationCore® content generation and investigative toolset codebases; contributed to 19 quarterly code development cycles by adding features such as FDA CDx claim annotation, rapid XML extraction, expanded script querying, and automatic QC-ing. -
Research Associate | Cancer GenomicsFoundation Medicine Jul 2018 - Jul 2021Boston, Massachusetts, Us
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Bioinformatics Core Services InternRegeneron Pharmaceuticals, Inc. Jun 2016 - Aug 2017Tarrytown, New York, UsRegeneron is a pioneering biotech renowned for cultivating life-transforming therapeutic antibody medications from invention to commercialization via a rigorous, ultraprecise molecular genetics discovery pipeline and trailblazing investment in sequencing over a million human exomes.‣ Devised programmatic pipeline interpreting sequencing data for a novel assay since used to validate the safety of early-candidate cancer-targeting bispecific antibodies for human usage.‣ Built a bioinformatic software suite improving designs of CRISPR, TaqMan, and other oligo-mediated assays used across Regeneron by enabling scientists to harmonize for Regeneron-specific strain variations in mice.‣ Produced backend processes powering interactive applications for user-defined analyses of BED, VCF, and other NGS-derived data, optimized for a distributed Linux HPC environment. -
Bd2K-Lincs Data Coordination And Integration Center Summer Research Training FellowIcahn School Of Medicine At Mount Sinai Jun 2015 - Aug 2015New York, Ny, Us‣ Programmed prototype web platform for differential gene expression visualization, interpretation and downstream enrichment examination facilitating future drug development.‣ Discovered enrichment conveying a novel central role for NUCKS1 transcription factor in Alcoholic Liver Disease. -
Public Relations InternMaria Fareri Children'S Hospital May 2014 - Jul 2014Main focus was on expanding the Hospital’s social media programs and reaching out to potential corporate partners.
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Case Management/Utilization InternWestchester Medical Center May 2014 - Jun 2014Valhalla, New York, UsFocused mainly on the technical design of the hospital's case management review systems and human data analysis. -
Paid ResearcherUniversity Of Illinois At Urbana-Champaign Jun 2013 - Aug 2013Champaign, Il, UsMy research combined two forms of self-healing concrete: bacterial concrete and Engineered Cementitious Composite (ECC). Bacterial concrete employs bacteria to re-glue cracks using biocalcification, while ECC ties the concrete together with tailored fibers enabling the cracks to stay so small that they can heal spontaneously. I combined these two forms of concrete and tested the "hybrid" in multiple settings, including lab, underground and field environments. I also ran tests to assess the compatibility between the bacteria and fibers. The results show that the combined approach self-healed more effectively and that self-healing was statistically as effective in the underground environment as in the optimal control environment.
Ben Kaplan Education Details
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Carnegie Mellon UniversityComputational Biology
Frequently Asked Questions about Ben Kaplan
What company does Ben Kaplan work for?
Ben Kaplan works for Lifecanvas Technologies Inc.
What is Ben Kaplan's role at the current company?
Ben Kaplan's current role is Computational Biologist | Bioinformatics Data Scientist | Cancer Genomics Research | Translational Informatics | Precision Medicine | NGS Innovation.
What is Ben Kaplan's email address?
Ben Kaplan's email address is ka****@****lls.org
What is Ben Kaplan's direct phone number?
Ben Kaplan's direct phone number is +191470*****
What schools did Ben Kaplan attend?
Ben Kaplan attended Carnegie Mellon University.
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