Brajendra Kumar Email & Phone Number

1. Specialist in analytical pipeline design for high throughput sequencing data for RNA-seq, Exome-Seq & Methylome-seq studies from Illumina, Roche and ABI platforms. Expertise in de novo and reference based assembly, transcript abundance & quantification, Variant detection, Differential expression, Annotation,2. Proficient in Quality analysis and filtering of reads generated in single, mutiplexed and hybrid sequencing and developed tool for same. 3.Expertise in "Data Integration and Knowledge base development". 4. Supervised and involved in development of several web based application modules using LAMP (Linux, Apache, Mysql, Perl) and Catalyst Framework.5. Worked on Cloud platform (Amazon Web Server) and familiar with application setup. 6. Research experience in Plant Genomics, Epitope prediction, Homology modeling & Molecular Evolution.Interest :Studying Genetics and Genomics of complex and hereditary diseases using NGS technology. Exploring the various factors (viz .effect of epigenomics event, AS event and effect of variation, role of non-coding RNAs etc) involved in regulation of gene expression .Specialties: Expert in QC of NGS reads, analysis of RNA-seq, Exome seq data (Tuxedo suite, Trans-abyss, Trinity, Cap3, Samtools, BWA, Annovar,SIFT etc ). Scientific programming using Perl and R. Designing Schema for Databases. Capable of Object oriented programming in Perl & Java. Web programming, bash scripting and efficient to work on Linux Platform. Strong concepts in fundamental biology with experience in wet lab techniques in molecular biology, immunology, RDT, Plant tissue culture etc.

Listed skills include Bioinformatics, Genomics, Sequence Analysis, Molecular Biology, and 28 others.