Research Software Engineer (Hmc Clinic)
Current•Developed a machine learning-driven multi-scale modeling infrastructure in a team of 6 engineers, automating Ultra Coarse-Grained (UCG) to Martini Coarse-Grained (CG) model transition, improving workflow efficiency by 10%• Refactored, optimized, and tested codebase from Perl to Python; automated the CG-to-UCG transition using Pandas, SciPy, Shell scripting, and MDAnalysis, reducing execution time by 25%, memory usage by 15%, and bug occurrence by 40%• Integrated MLP neural networks into the UCG-to-CG transition process using PyTorch, TensorFlow, and CUDA, reducing prediction errors by 30% and improving detail structural resolution of by 10%