Christopher Brumbaugh

Christopher Brumbaugh Email and Phone Number

Attended University of California, Santa Cruz
Christopher Brumbaugh's Location
Hacienda Heights, California, United States, United States
Christopher Brumbaugh's Contact Details

Christopher Brumbaugh work email

Christopher Brumbaugh personal email

n/a
About Christopher Brumbaugh

I am a self-motivated bioinfomatics/data scientist searching for opportunities. I love to tinker around with code and automate my hobbies.Currently I have submitted an entry for the ACIC 2018 Causal Inference Challenge.My projects and some random scripts can be found at https://github.com/cbrumbau

Christopher Brumbaugh's Current Company Details

Attended University of California, Santa Cruz
Christopher Brumbaugh Work Experience Details
  • University Of California, Los Angeles
    Research Assistant
    University Of California, Los Angeles Jan 2016 - Jun 2016
    Los Angeles, California
    Performed Net-Cox regression analysis and GO term analysis of normal and tumor head-neck squamous cell carcinoma using publicly available data from The Cancer Genome Atlas. Found more than thirty significant downregulated genes involved in the extracellular region and the adhesion and diapedesis of granulocytes.https://github.com/cbrumbau/hnsc-analysis
  • University Of California, Santa Cruz
    Phd Candidate
    University Of California, Santa Cruz Sep 2014 - Jun 2015
    Santa Cruz, California
    Designed a base caller in Python that used the current trace analysis normalized by the software pipeline from Oxford Nanopore Technologies and generated base calls on modified nucleotides.
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  • University Of California, Santa Cruz
    Phd Candidate
    University Of California, Santa Cruz Sep 2013 - Aug 2014
    Santa Cruz, California
    Implemented Python scripts to assemble the CagY gene from H. pylori using PacBio sequencing data. Resolved issues found with reads unable to cover the long repeat regions present in the CagY gene.https://github.com/cbrumbau/CagY-assembly
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  • University Of California, Santa Cruz
    Research Assistant
    University Of California, Santa Cruz Sep 2010 - Jun 2012
    Santa Cruz, California
    Built an automated website tool using an R and PHP based backend for biologists that produced heatmap plots using NanoString microRNA expression assays. Seamlessly performed t-test or negative binomial test for two samples and ANOVA for multiple samples which then automatically generated a heatmap and a results table if any statistically significant genes were found.https://github.com/cbrumbau/NanostriDE
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  • University Of California, Santa Cruz
    Research Assistant
    University Of California, Santa Cruz Jan 2010 - Mar 2010
    Santa Cruz, California
    Wrote a median cost function in C for Undertaker, a program that is used to assist in predicting protein structure by generating conformations using alignments to known structures. This implementation removed the reliance on external software that was needed for model quality analysis.
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  • Invitrogen Corporation
    Primary And Stem Cell Systems Intern
    Invitrogen Corporation Jul 2008 - Mar 2009
    Carlsbad, California
    Planned a sales database and built a MySQL database and corresponding web interface using the PHP framework symfony for an internship.

Christopher Brumbaugh Skills

Linux Python Perl Shell Scripting R Latex Php Java Javascript C C++ Mysql

Christopher Brumbaugh Education Details

Frequently Asked Questions about Christopher Brumbaugh

What is Christopher Brumbaugh's role at the current company?

Christopher Brumbaugh's current role is Attended University of California, Santa Cruz.

What is Christopher Brumbaugh's email address?

Christopher Brumbaugh's email address is cb****@****csc.edu

What schools did Christopher Brumbaugh attend?

Christopher Brumbaugh attended University Of California, Santa Cruz, Uc San Diego.

What skills is Christopher Brumbaugh known for?

Christopher Brumbaugh has skills like Linux, Python, Perl, Shell Scripting, R, Latex, Php, Java, Javascript, C, C++, Mysql.

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