I am a versatile and enthusiastic bioinformatics professional with a strong academic background in biology, psychology, and data science. Proficient in Python, R, C, C++, Java, and front-end technologies, I excel in developing and implementing machine learning models and statistical analyses to tackle complex challenges in bioinformatics.My expertise extends to Next-Generation Sequencing (NGS) and bioinformatics pipelines, including WES, WGS, and RNA, coupled with a deep familiarity with databases like GenBank, OMIM, KEGG, PO, PID, and REACTOME. I leverage bioinformatics tools such as BWA, Fastp, Samtools, and Annovar to drive insightful analyses.With hands-on experience in molecular biology techniques and counseling psychology, I possess valuable personality assessment and counseling skills. Continuously driven to expand my knowledge, I am eager to deepen my understanding of the field and contribute to innovative bioinformatics projects.Drawing from cross-cultural experiences and a passion for diversity, I seek opportunities to gain research experience and integrate my interdisciplinary skill set to advance scientific discovery. Let's connect and explore potential collaborations in this exciting field!
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Bioinformatics AnalystFreelance
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Data AnalystHsbc Mar 2024 - PresentGuangzhou, Guangdong, China -
Bioinformatics Engineer北京携云启源科技有限公司 Nov 2021 - May 2024中国 湖南省 长沙● Build Statistics and Machine Learning Platform for Clinical Data Analysis Independently ○ Including Pearson, Spearman, kendall, t-test, chi-square test, ANOVA; Linear, logistic, lasso, ridge, decision tree, SVM, random forest, XGBoost, naïve bayes, KNN, K-means.● Main developer of DbABC(Database of Antibiotic resistome and Biosysthetic gene).○ Collect, clean, organize data from MIBIG, CARD, MeSH and build connections between databases○ Build and deploy analysis tools such as BLAST, RGI.○ Develop Website display and downloading results● Spark Machine Learning programming and testing ● Building Somatic mutation pipeline ● Led the project to build a Whole-Exome Sequencing (WES) Tumor analysis pipeline by:○ processing, filtering and calculating NGS DNA data○ generating scientific reports for research and clinical usage○ using CWL (Common Workflow Language) with JavaScript and YAML● Contributed to the Whole-Exome Sequencing (WES) and the Whole Genome Sequencing (WGS) Downstream Analysis● Contributed to the drug-disease database project:○ parsing the data from drugbank and NCBI databases○ designing and building relational databases for storing the filtered and organized datasets● Testing and modifying Chinese medicine clinical trial equipment management system.● Researcher for Knowledge graph for precision medicine: study from Clinical Knowledge Graph, PrimeKG, and other medical-related knowledge graph systems, organize and process data, and design and construct knowledge graph structure.● Instructor of bioinformatics teaching lectures for Xie He hospital inner training.● Writing scientific articles for Qi He Medical Official account.
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Information /Data Engineer湖南先赛生物科技有限公司 Jul 2021 - Oct 2021中国 湖南省 长沙● Contributed to the Alzheimer’s Disease self-antibody biomarker project by: ○ Collecting and using meta-analysis to compare and analyze different medical papers ○ Training clinical data using ML models (random tree and SVM) ○ Analyzing, processing project related data and generate reports using Python and Excel○ Translating and writing English documents related to the project ● Helped with the development of a healthcare information management system by designing and building MySQL databases for storing patients’ medical records and clinical data
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Bioinformatics Engineer长沙三济生物科技有限公司 Jun 2020 - Nov 2020中国 湖南 长沙● Contributed to the Thalassemia project by writing scripts and using bioinformatics tools to process illumine BCL files and build an NGS pipeline ● Maintained the company owned Linux centos servers ● Wrote review reports regarding different cancer gene locus ● Contributed to the renovation and development of the company official website -
Private TutorSelf Employed Feb 2020 - May 2020中国 湖南 长沙 -
英语助理教员美联英语 Nov 2019 - Jan 2020中国 湖南 长沙 -
Volunteer Research Assistant湖南师范大学 Aug 2019 - Oct 2019Changshadevelopmental psychology. child and adolescent education
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ConsultantNew Oriental Vision Overseas Consulting (Uk) Limited Sep 2017 - Nov 2017中国 湖南 长沙 -
Undergraduate Research Assistant美国纽约州立大学布法罗分校 Mar 2016 - Jul 2016Buffalo/Niagara, New York Areacognitive psychology lab -
Undergraduate Research Assistant美国纽约州立大学布法罗分校 Jul 2013 - May 2014Buffalo/Niagara, New York Areaevolution and bioinformatics
Chushu Tan Education Details
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Applied Psychology -
Biology/Biological Sciences, General -
University At BuffaloPsychology -
Master Of Information Technology
Frequently Asked Questions about Chushu Tan
What company does Chushu Tan work for?
Chushu Tan works for Freelance
What is Chushu Tan's role at the current company?
Chushu Tan's current role is Bioinformatics Analyst.
What schools did Chushu Tan attend?
Chushu Tan attended 中国政法大学 China University Of Political Science And Law, 澳大利亚蒙纳士大学, University At Buffalo, University At Buffalo, Monash University.
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