Clyde J.

Clyde J. Email and Phone Number

Senior architect / engineer for a hybrid (cloud + on prem) data analysis platform within regulated industries. @ Dotmatics
Clyde J.'s Location
Montara, California, United States, United States
Clyde J.'s Contact Details
About Clyde J.

With years of experience in bioinformatics engineering and system architecture, I am passionate about creating innovative and scalable solutions for genomics and personalized medicine. As a Bioinformatics Engineer at Helix, I worked with a talented team of scientists, engineers, and product managers to design, develop, and maintain bioinformatics pipelines and platforms that enable high-quality DNA testing and analysis services for our customers and partners.I leverage my expertise in DevOps, databases, coding, and systems administration to optimize the performance, reliability, and security of our bioinformatics infrastructure. I am proficient in tools and languages such as Ansible, Jenkins, Terraform, Git, bash, python, and go, and I follow agile and GitOps best practices to deliver fast and efficient solutions. I also have a background in chemistry and molecular biology, and I enjoy applying my skills and knowledge to solve complex and challenging problems in the field of genomics.

Clyde J.'s Current Company Details
Dotmatics

Dotmatics

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Senior architect / engineer for a hybrid (cloud + on prem) data analysis platform within regulated industries.
Clyde J. Work Experience Details
  • Dotmatics
    Senior Cloudops Engineer
    Dotmatics Jul 2024 - Present
    Boston, Massachusetts, Us
  • C & C Consulting
    Principal Architect
    C & C Consulting Jun 2024 - Present
  • Helix
    Bioinformatics Engineer
    Helix Apr 2021 - Feb 2024
    San Mateo, California, Us
    - Built and maintained high performance computing infrastructure - Gap analysis for HIPAA compliance for FDA regulatory filings - HIPAA compliance plans and implementation - Built and maintained data loading and ETL pipelines - Maintained and designed compute solutions in AWS - Cost optimization (FinOps) for compute and storage solutions in AWS - Project plans and documentation using Confluence - Automation of build and deploy for HPC software; SGE, ParallelCluster, Slurm - Infrastructure as code for cloud-based infrastructure projects; CircleCI, CDK, Docker and Packer - Data migrations to cloud platforms.
  • Genentech
    Senior System Architect
    Genentech Jan 2015 - Mar 2021
    South San Francisco, California, Us
    • Architect for HPC infrastructure deployments for gRED and Roche Global• Architect for hybrid compute solutions in AWS, GCP and internal data centers• Architect for DevOps tooling for Kubernetes projects, and container workflow automation• Collected user requirements and wrote global planning documents• Project documentation using Confluence and JIRA• Automation of build and deploy for HPC software• Cost optimization (FinOps) for compute and storage solutions in AWS• IaC (Infrastructure as code) for cloud-based and data center infrastructure projects• Managed and trained interns; design review and architect for gRED intern projects• Invited software project design review for external teams. • Built and maintained general and high-performance computing infrastructure • Project management for infrastructure improvements and scientific application deployment • Deploy cloud solutions on AWS, GCP and OpenStack • Data center migrations; both computation and data migrations • Collect user requirements and business, write project plans and documentation • Author and implement user and business workflow diagrams and processes • Project documentation and cGMP analysis documentation • Vendor selection committee for global projects • Support for scientific groups such as DNA sequencing, molecular modeling, and other labs.
  • Amgen
    Specialist Systems Administrator
    Amgen Apr 2011 - Dec 2014
    Thousand Oaks, Ca, Us
    • Built and maintained HPC infrastructure• Big Data ingest from CRO (contract research organizations) and internal partners• Collected user requirements and planned global infrastructure projects• Cloud migration of genomic and clinical datasets• Secure data migration from partner companies• Planned and executed disaster recovery operations• Data center management and migrations to new facilities• Project management for infrastructure and application deployment for scientific groups • Systems administration for Red Hat Enterprise Linux, Solaris, and Windows servers.
  • Exelixis
    Senior Applications Engineer
    Exelixis Feb 2007 - Apr 2011
    Alameda, California, Us
    • Inter-department liaison for IT, Structural Biology, and Non-Clinical Development groups; collected user requirements and created planning documentation• Built and maintained data loading and ETL pipelines• Built and maintained high-availability clusters and general computing infrastructure• Built and maintained systems monitoring software, built custom monitoring plug-ins and service control applications• Implemented automated software testing, software quality documentation and testing• Software development in deployment planning and scalability testing• Managed and planned software projects for Histology, Structural Biology, Biostatistics, and other scientific groups• Systems administration for Red Hat, SUSE, Solaris, and Windows servers.
  • Thermo Electron
    Sr Analyst
    Thermo Electron Jun 2000 - Feb 2007
    Waltham, Ma, Us
    • Consultant for client installations; collected user requirements and oversaw project implementation• Created validation documentation for all phases of implementation projects• Wrote integration software and data analysis software for LIMS and supporting systems• Installed and configured SampleManager LIMS systems in regulated and non-regulated industries; e.g. Pharma, Oil and Gas, Chemical Manufacturing• Executed validation testing for pharmaceutical manufacturing installations• Data migrations for manufacturing and regulatory data
  • Thermo Electron
    Implementation Analyst
    Thermo Electron 2000 - 2007
    Waltham, Ma, Us
    Installing and configuring Samplemanager in various industries. Concentrated on Validated installations for pharma and biotech
  • Bristol-Myer Squibb
    Consultant
    Bristol-Myer Squibb Jan 2002 - Dec 2006
    Lawrence Township, Nj, Us
    Installed and configured Samplemanager limsBuilt validation protocols and documentation. Third tier supportcustom scripts for data analysis and entry verification.
  • Taratec Development Corp
    Lims Consultant
    Taratec Development Corp Jun 1999 - Jun 2000
    Us
    Installed and configured LIMS systems in regulated industries. Created validation documentation
  • Johns Hopkins University
    It Analyst
    Johns Hopkins University 1999 - 2000
    Baltimore, Md, Us
    systems administration for Windows NT, Linux, UNIX.Support Dean of arts & sciences business office, Department of earth and planetary sciences. Purchased and upgraded computer systems for business office. employed work-study students in build/repair of departmental computers.
  • Biogen
    Application Analyst
    Biogen 1996 - 1999
    Cambridge, Ma, Us
    Wrote analytic software for assay validationSoftware instrument integrationsLaboratory data analysisDesigned and wrote analytic methods for preclinical and manufacturing analysisLIMS implementation

Clyde J. Education Details

  • California State University, Long Beach
    California State University, Long Beach
    Biochemistry
  • University Of California, Santa Cruz
    University Of California, Santa Cruz
  • Tufts University
    Tufts University
    Biochemistry

Frequently Asked Questions about Clyde J.

What company does Clyde J. work for?

Clyde J. works for Dotmatics

What is Clyde J.'s role at the current company?

Clyde J.'s current role is Senior architect / engineer for a hybrid (cloud + on prem) data analysis platform within regulated industries..

What is Clyde J.'s email address?

Clyde J.'s email address is sl****@****ail.com

What is Clyde J.'s direct phone number?

Clyde J.'s direct phone number is (650) 467*****

What schools did Clyde J. attend?

Clyde J. attended California State University, Long Beach, University Of California, Santa Cruz, Tufts University.

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