Chen Zhao

Chen Zhao Email and Phone Number

Head of Computational Biology - Molecular Lab Applications @ Roche @ Roche
Chen Zhao's Location
San Diego, California, United States, United States
Chen Zhao's Contact Details

Chen Zhao work email

Chen Zhao personal email

About Chen Zhao

Ph.D. in electrical and computer engineering. 12+ years experience in machine learning and bioinformatics. 10+ years experience in developing clinical grade NGS tests in both NIPT and Oncology. Strong analytical and programming skills. Interested in building algorithms and predictive models to interpret large scale biological data.

Chen Zhao's Current Company Details
Roche

Roche

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Head of Computational Biology - Molecular Lab Applications @ Roche
Chen Zhao Work Experience Details
  • Roche
    Chapter Lead, Head Of Computational Biology, Molecular Lab Applications
    Roche Sep 2022 - Present
    Switzerland 🇨🇭 , Ch
    - Lead multiple bioinfo & SW teams for molecular applications (infectious disease, NIPT, oncology, Avenio, Kapa reagent, CLIA lab) and new sequencing platform development
  • Illumina
    Director Of Bioinformatics, Oncology
    Illumina Dec 2021 - Sep 2022
    San Diego, Ca, Us
    - Oversee Oncology bioinformatics research & development at Illumina, including tissue biopsy, liquid biopsy, CDx programs, pharma collaboration, biomarker discovery.- Lead TSO500 bioinfo development, CEVID & IVD submission.
  • Illumina
    Associate Director, Bioinformatics
    Illumina Jul 2020 - Dec 2021
    San Diego, Ca, Us
    - Lead DRAGEN biomarker development - TMB, MSI, HLA, HRD etc- Lead bioinfo validation studies for CovidSeq FDA submission - the first FDA EUA approval for NGS based Covid19 detection (plus mutation detection and consensus genome generation). The test is broadly used for virus lineage tracking.- Hired and managed a team of ~20 bioinfo scientists
  • Illumina
    Sr. Manager, Bioinformatics, Clinical Genomics
    Illumina Aug 2018 - Jun 2020
    San Diego, Ca, Us
    - Three times Illumina Value Award for major contributions to tissue and liquid biopsy product development and academia collaborations- Bioinfo lead for TruSight Oncology 500 RUO and IVD development - a 500+ gene panel to enable targeted therapy and immuno-oncology related applications (RUO launched in Jan 2019)- Bioinfo lead for TruSight UMI toolkit - ultra sensitive variant detection in ctDNA samples (product launched in April 2018)
  • Illumina
    Manager, Bioinformatics, Clinical Genomics
    Illumina Dec 2016 - Aug 2018
    San Diego, Ca, Us
    -Algorithm and pipeline development for Illumina's ctDNA assay-Key contributor for TruSight Tumor 170 (development of tumor only FFPE CNV calling, execution of DVT studies, etc)
  • Illumina
    Bioinformatics Scientist 2
    Illumina Sep 2014 - Nov 2016
    San Diego, Ca, Us
  • Sequenom Laboratories
    Bioinfo Scientist 1, 2 And Sr Bioinformatics Scientist
    Sequenom Laboratories Jun 2012 - Sep 2014
    San Diego, Ca, Us
    -Main developer for genome wide microdeletion (>=5Mb) detection in NIPT (first ever commercial test on market)-Designed a suite of algorithms that extended MaterniT21™ PLUS test to cover 6 additional microdeletion syndromes (product launched in October 2013)-Bioinformatics support for NGS data normalization and interpretation-Drafted 4 patent applications and published 4 high impact journal articles
  • Tgen
    Intern And Research Fellow
    Tgen Jan 2011 - Jun 2012
    Phoenix, Az, Us
    -Developed a classification pipeline for high throughput protein biomarker discoveries-Developed a Java tool for peptide quantification using extract ion chromatograms. Reduced computation time by up to 10 fold compared to vendor software-Modeled cell line's gene expression dynamics after drug treatment using high throughput green fluorescent protein technology-Developed a novel time series data alignment algorithm to identify mechanistic similarities among anti-cancer drugs. The algorithm achieved 97% accuracy under real experimental conditions
  • Texas A&M University
    Research Assistant
    Texas A&M University Jun 2008 - Jan 2011
    College Station, Tx, Us
    -Identified potential biomarkers for patients at high risks for colon cancer using microarray gene expression data-Established the theoretical relationship between prior biological knowledge and the accuracy of classification results-Developed a method to detect master genes in Bayesian networks and successfully applied the method to real biological networks

Chen Zhao Skills

Genomics Bioinformatics Statistics Pattern Recognition R Matlab Java C Next Generation Sequencing Machine Learning Time Series Analysis Proteomics Gene Regulatory Networks Cancer Drug Response Analysis And Modeling C++ Sqlite Dna Sequencing Sequencing

Chen Zhao Education Details

  • Texas A&M University
    Texas A&M University
    Electrical And Computer Engineering
  • Texas A&M University
    Texas A&M University
    Electrical And Electronics Engineering
  • Beijing University Of Posts And Telecommunications
    Beijing University Of Posts And Telecommunications
    Telecommunication Engineering

Frequently Asked Questions about Chen Zhao

What company does Chen Zhao work for?

Chen Zhao works for Roche

What is Chen Zhao's role at the current company?

Chen Zhao's current role is Head of Computational Biology - Molecular Lab Applications @ Roche.

What is Chen Zhao's email address?

Chen Zhao's email address is cz****@****ina.com

What schools did Chen Zhao attend?

Chen Zhao attended Texas A&m University, Texas A&m University, Beijing University Of Posts And Telecommunications.

What skills is Chen Zhao known for?

Chen Zhao has skills like Genomics, Bioinformatics, Statistics, Pattern Recognition, R, Matlab, Java, C, Next Generation Sequencing, Machine Learning, Time Series Analysis, Proteomics.

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