Daniel Rios Email & Phone Number

Barcelona, Ct, Es

Cambridge, United Kingdom

At nCipher Security, helping empower world-leading organizations to protect against cyber threats by delivering trust, integrity and control to their business critical information and applications.

Cambridge, United Kingdom

- Provided near box professional services to the EMEA sales team and the EMEA reseller community on the complete Thales eSecurity product line- Acted as technical evangelists for Thales eSecurity hardware and software products with customers, resellers and other stakeholders- Implemented backend support for a monitoring tool using Spring Data and Hibernate- Customer facing role delivering training and on-site consultancy tasks (hardware deployments, configurations, technical support) - Java tools to generate and import some symmetric keys into Thales cryptographic key management framework.- Asynchronous Java library performing crypto operations not supported natively by the standard cryptographic providers- FTP server responsible for performing signature and verification operations on uploaded documents and delivery of those documents to a third party FTP server through VPN.

Cambridge, United Kingdom

- Developed high-throughout pipelines to analyze bioinformatic data- Implemented Hibernate schema for the new PRIDE (http://www.ebi.ac.uk/pride) database using both the Java JPA package and the corresponding mapping files- Developed back-end support for Pride Inspector, a Java tool to visualize and analyze mass spectrometry data (http://code.google.com/p/pride-toolsuite/wiki/PRIDEInspector)- Maintained and developed several Java APIs to manipulate mass spectrometry data, such as jmzIdentML (http://code.google.com/p/jmzidentml/)- Implemented Distributed Annotation Server (DAS) for PRIDE data (http://www.ebi.ac.uk/das-srv/pride/das/)- Implemented automated pipeline in Java as part of the submission process for the ProteomeXchange consortium (http://www.proteomexchange.org/- Part of the submission team to help data deposition into the PRIDE database from scientists- Technical user training and support

Cambridge, United Kingdom

- Designed new database schema to support variation data.- Creation of the pipeline to import and validate external data from external sources (dbSNP, HapMap) into the Ensembl database. (www.ensembl.org)- Developed Perl object oriented interface to support data access and manipulation.- Written optimized C code to calculate LD values on the fly- Developed simple algorithm to compress large-scale and dense genotype data, from the original 1 billion entries table to a 12 million genotype table, reducing the size in more than 15 Gb.- Maintained and extended Java healthcheck system- Involved in the bimonthly Ensembl database production cycle- Technical user training an support

Cambridge, United Kingdom

- Developed Perl scripts to analyze genomic data.- Creation of several Perl/Tk interfaces to allow the input of data from biologists.- Responsible for giving database support to biologists.- Developed Perl CGI scripts to provide data to scientists in the laboratory.- Responsible for creating importing scripts for dbSNP data

Stockholm, Sweden

- Responsible for redesigning the database structure for HGVbase (Human Genome Variation database at http://hgvbase.cgb.ki.se).- Responsible for implementing and maintaining the database and importing data from external sources (Ensembl, dbSNP and HapMap- Developed an object-oriented tool in Perl to check consistency and integrity for the addition of new data to the database.- Participated in the creation of a new search engine for HGVbase.- Developed Perl CGI scripts to support various web applications.

Master Thesis, Computer Science

M.S., Computer Science