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As a bioinformatics director and project manager at the University of Pennsylvania, I lead a team of bioinformaticians to drive research projects for commercial and academic clients focused on human retroviral and AAV gene therapies. With more than 15 years of experience in bioinformatics and structural biology, I have developed and deployed informatic pipelines for evaluating virus integration patterns, tracking the emergence of SARS-Cov-2 variants, analyzing RNAseq profiles, and evaluate more than 15 human gene therapy trials. I have managed large scale production pipelines, research programmers, and research projects spanning multiple disciplines including human gene therapy, molecular biology, protein science, and structural biology. I have authored and co-authored more than 65 peer-reviewed publications in the fields of protein science, gene therapy, and bioinformatics.
University Of Pennsylvania
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Director Of BioinformaticsUniversity Of Pennsylvania May 2016 - PresentPhiladelphia, Pa, Us• Manage bioinformaticians to drive research projects for commercial and academic clients. • Perform custom informatic analyses for both academic and commercial clients.• Develop and deploy informatic pipelines for retroviral / AAV gene therapies, tracking the emergence SARS-Cov-2 variants, taxonomic assignments, RNAseq profiling, and genomic sequencing.• Track and evaluate patient samples for more than 15 human gene therapy trials. • Develop novel approaches for sequencing and characterizing AAV integration events. • Expert in data management, cloud computing, and best software practices. -
Bioinformatics Scientist - Assistant Research ProfessorRutgers University Jun 2010 - May 2016New Brunswick, Nj, UsDeveloped a robust web based LIMS integrating bench top data collection, robotics and informatics for the NorthEast Structural Genomics consortium (NESG) responsible for coordinating activities across more than 10 institutions. Served as the NESG expert bioinformatician in the NIH BioInformatics Group (BIG) and built public data repositories for protein production, NMR, X-Ray crystallography and SAXS data. Mentored honor theses and graduate students in the areas of bioinformatics and structural biology. -
Project Manager For The Northeast Structural Genomics ConsortiumRutgers University Mar 2008 - Jul 2015New Brunswick, Nj, UsManaged the $60M NIH funded NESG protein production pipeline , involving some 20 molecular biologists, protein scientists, and technicians to create and characterize more than 75,000 protein expression constructs. This pipeline included the cloning, fermentation, purification, characterization, and structure determination of proteins from more than 100 organisms leading to the determination of more than 1,000 NMR and X-Ray protein structures.Managed software developers, database developers and system administrators and worked to standardized community data exchange formats to disseminated large volumes of protein production and structure determination data to public repositories.Coordinated research projects across more than 10 research institutions involving more than 50 researchers. Research projects included: ▪ Structural coverage and homology modeling of protein sequence space ▪ Structure determination of key human cancer proteins ▪ Structure determination of de novo proteins ▪ Development of new bioinformatics analyses. ▪ Development of new protein production and NMR technologies. -
Database DeveloperRutgers University Jun 2007 - Mar 2008New Brunswick, Nj, UsCurated protein targets for the NorthEast Structural Genomics consortium (NESG). Designed alternative protein expression constructs based upon bioinformatic analysis such as secondary structure, disorder, domain boundary predictions and family alignment analyses in order to maximize protein expression and solubility. Restructured and advanced the NESG's consortium wide laboratory information system. -
Post Doctorial FellowRutgers University Oct 2006 - Mar 2007New Brunswick, Nj, UsNMR studies of the detergent solublized C. elegans mechanosenory ion channel complex and associated cytosolic proteins.
John Everett Skills
John Everett Education Details
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Rutgers UniversityBiochemistry -
Rutgers UniversityBiochemistry & Psychology
Frequently Asked Questions about John Everett
What company does John Everett work for?
John Everett works for University Of Pennsylvania
What is John Everett's role at the current company?
John Everett's current role is Bioinformatics Director @ University of Pennsylvania | Expert in Analyses of Gene Therapies and Structural Genomics.
What is John Everett's email address?
John Everett's email address is ev****@****ail.com
What schools did John Everett attend?
John Everett attended Rutgers University, Rutgers University.
What skills is John Everett known for?
John Everett has skills like Nmr, Bioinformatics, Protein Expression, Perl, Java, Project Management, Proteomics, Structural Genomics, C++, Mysql, Flash, Computational Biology.
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