Mark Jensen

Mark Jensen Email and Phone Number

Director Data Science @ Frederick National Laboratory for Cancer Research
Rockville, MD, US
Mark Jensen's Location
Rockville, Maryland, United States, United States
Mark Jensen's Contact Details
About Mark Jensen

I lead diverse teams to success in the biomedical data enterprise.Because I can (and do) perform business development, project management, design of data architecture, software development, and bioinformatics analysis, I identify with and understand the objectives and pain points of a program leader, a manager, an engineer, or a scientist.I lead complex projects by helping these stakeholders determine together how their individual objectives contribute to an overall vision of the project, program, or contract. Together with them, I establish how we will hold ourselves accountable as a team for the success of the effort, whether that is the development of a software system or a strategy for data organization and governance.The tools and techniques we use might combine data and design technologies, requirements elicitation, Agile methodologies, production and schedule targets -- anything that enables the team to keep their mutual commitments and measure -- and communicate -- their own success.

Mark Jensen's Current Company Details
Frederick National Laboratory for Cancer Research

Frederick National Laboratory For Cancer Research

View
Director Data Science
Rockville, MD, US
Website:
cancer.gov
Employees:
5374
Mark Jensen Work Experience Details
  • Frederick National Laboratory For Cancer Research
    Director Data Science
    Frederick National Laboratory For Cancer Research
    Rockville, Md, Us
    View
  • Frederick National Laboratory For Cancer Research
    Director Data Science
    Frederick National Laboratory For Cancer Research Jun 2023 - Present
    Frederick, Maryland, Us
    View
  • Frederick National Laboratory For Cancer Research
    Director, Data Management And Interoperability
    Frederick National Laboratory For Cancer Research Oct 2018 - Jun 2023
    Frederick, Maryland, Us
    I provide program leadership in data architecture and software development, supporting the Cancer Research Data Commons, an initiative of the National Cancer Institute's (NCI's) Center for Biomedical Informatics and Information Technology (CBIIT), as well as the Cancer Moonshot(sm) Biobank for the NCI's Biorepositories and Biospecimen Research Branch (BBRB). I manage 8 PhD-level direct reports.[ The FNLCR is operated by Leidos Biomedical Research, Inc. on behalf of the NCI. ]
    View
  • Frederick National Laboratory For Cancer Research
    Director, Genomic Data Programs
    Frederick National Laboratory For Cancer Research Oct 2014 - Oct 2018
    Frederick, Maryland, Us
    I was part of the senior leadership team managing the design, maintenance, and ongoing development of a major cancer genomic data resource, the Genomic Data Commons (GDC).[ The FNLCR is operated by Leidos Biomedical Research, Inc. on behalf of the NCI. ]Highlights:Developed ongoing close working relationships with cancer genomics experts nationally and internationally, gaining diverse thought leadership contributions and buy-in for the GDC, establishing and leading the GDC Steering Committee, GDC Data Advisory Group, and Genomic Data Publication Policy Group, among others; Developed trusted advisor relationships with NCI Center for Cancer Genomics (CCG) personnel, and have presented the GDC project in outward-facing contexts, such as the NIH Data Science Policy Council, on behalf of the CCG;Established, developed and led collaborations between GDC and the NCI Center for Biomedical Informatics and Information Technology (CBIIT), in work involving Enterprise Vocabulary Services (clinical data standards) and the NCI Cancer Cloud Resources program;Designed and managed the implementation of sophisticated and flexible metadata models and storage systems, involving graph database concepts, ontology and semantics;Provided scientific content and tools for GDC and other CCG projects, including a machine-learning-based tool for determining the tumor or normal status of a tissue sample based on raw whole exome sequence data.
    View
  • Fortinbras Research
    Senior Consultant
    Fortinbras Research May 2008 - Present
    Us
    Fortinbras Research provides its clients custom bioinformatics code and applications.Highlights:Developed and continue to maintain http://spatyper.fortinbras.us, the only freely available web-based Staphylococcus aureus spa typing (molecular epidemiology) application;Developed and maintain Perl object bindings to the Neo4j graph database REST interface (REST::Neo4p), currently available through CPAN (http://metacpan.org/module/REST::Neo4p) and on the Neo4j site (at https://neo4j.com/developer/perl/);Developed and maintain a system for expressing Neo4j graph queries in Perl, Neo4j::Cypher::Abstract (https://metacpan.org/pod/Neo4j::Cypher::Abstract);Designed, developed, and integrated several BioPerl core modules, including Bio::DB::HIV for query-based access of the Los Alamos National Laboratory HIV Sequence Database, and Bio::Search::Tiling::MapTiling for the calculation of global sequence identity and similarity statistics based on BLAST or FASTA search reports. I continue to maintain these modules as necessary, as a BioPerl Core Developer (see Volunteer Positions).
    View
  • Csra Inc
    Scientific Project Director
    Csra Inc Jan 2014 - Oct 2014
    Falls Church, Va, Us
    I was the project manager of The Cancer Genome Atlas Data Coordinating Center (TCGA DCC), National Cancer Institute, National Institutes of Health.Highlights:Provided project and personnel management for a 12-member team of PhD/MS bioinformatics scientists, software engineers and software and process quality personnel for this high-visibility, high-usage program;Managed the software development life cycle for maintenance and improvement of DCC Data Portal data management and applications, in collaboration with the prime contractor Leidos BioMed and the TCGA Program Office at NCI;Developed and maintained open and collaborative communication with the TCGA Biospecimen Core Resource, CGHub, Genomic Characterization Centers, Genomic Sequencing Centers, Genomic Data Analysis Centers, and Analysis Working Groups in support of mutual goals and objectives;Provided writing, proposal development and thought leadership in business development activities within the SRA Health and Civil Group. Part of writing team that won the TCGA DCC recompete, and a major CDC bioinformatics recompete.
    View
  • Csra Inc
    Lead Scientist
    Csra Inc Apr 2011 - Jan 2014
    Falls Church, Va, Us
    Lead bioinformatics scientist in support of the Data Coordinating Center of the The Cancer Genome Atlas, National Cancer Institute, National Institutes of Health.Duties:Day-to-day management of 7-member PhD/MS level bioinformatics team;Management of custom, enterprise-level software and data format specification, development and implementation;Participation in project management, corporate and client reporting, and corporate business development;Facilitation of communication and collaboration among TCGA stakeholders, including participating universities, federal agencies, and federal contractors as well as the TCGA user community;Supervision of TCGA data and metadata submissions from consortium participants and assistance with submission and database quality assurance for multiple high-throughput datatypes.
    View
  • Csra Inc
    Senior Bioinformatics Scientist
    Csra Inc May 2010 - Apr 2011
    Falls Church, Va, Us
    Senior-level bioinformatics scientist in support of the Data Coordinating Center of the The Cancer Genome Atlas, National Cancer Institute, National Institutes of Health.Duties:Supervision of TCGA data and metadata submissions from consortium participants and assisting in submission and database quality assurance for multiple high-throughput datatypes;Facilitation of communication and collaboration among TCGA stakeholders, including participating universities, federal agencies, and federal contractors as well as the TCGA user community;Participation in and leadership of software and data format specification and development;Participation in group management, corporate and client reporting, and corporate business development.
    View
  • Csra Inc
    Scientific Review Officer
    Csra Inc Jul 2009 - May 2010
    Falls Church, Va, Us
    I organized and facilitated high-quality scientific review of research proposals for the Breast Cancer Research Program of the Congressionally Directed Medical Research Program, a process involving reviewer recruitment, proposal assignment, meeting organization, and post-review documentation.
    View
  • British Columbia Centre For Excellence In Hiv/Aids
    Consulting Scientist
    British Columbia Centre For Excellence In Hiv/Aids Jun 2008 - May 2011
    Vancouver, British Columbia, Ca
    I worked with Dr Richard Harrigan and the CFE Clinical Laboratories, doing bioinformatics research and software development for the analysis of ultra-deep HIV sequencing.
    View
  • University Of Georgia
    Assistant Professor
    University Of Georgia Aug 2006 - May 2008
    Athens, Ga, Us
    Assistant Professor of Genetics and Epidemiology
    View
  • Emory University
    Postdoctoral Fellow
    Emory University 2004 - 2006
    Atlanta, Ga, Us
    As a postdoctoral fellow at Emory University in the lab of Bruce Levin, I developed and analyzed a mathematical model of cholera epidemics that involved the interactions between the cholera bacteria, the human population, and bacterial viruses to which the cholera bacterium is susceptible. (see the paper; PubMed ID:16537404)I also developed and implemented a large database of antibiotic use and resistance information, integrating commercial anti-infective sales data with CDC antibiotic resistance data, for an ongoing project involving S. pneumoniae led by Keith Klugman at Emory and Cynthia Whitney, Chief of Respiratory Diseases, NCIRD, Centers for Disease Control and Prevention.
    View
  • University Of Washington
    Senior Fellow
    University Of Washington 2000 - 2004
    Seattle, Wa, Us
    While studying the pathogenesis and evolution of HIV at the University of Washington, I:* designed and performed computational biological research on within-patient HIV-1 molecular evolution and its relationship to HIV disease progression and prognosis. This work included aspects of HIV pathogenesis and rational vaccine design;* designed, coded and implemented a widely used, web-based HIV sequence analysis tool for the public domain based on the above research;* developed independent collaborations with the Laboratory of Immunoregulation (NIAID, NIH), Case-Western Reserve University, University of British Columbia, University of Witwatersrand (Johannesburg, ZA), and Microsoft Research, all of which yielded publications;* wrote the scientific content and managed the submission of a funded ($1.2M) NIH R01 grant;* trained and helped manage science professionals and students.
    View

Mark Jensen Skills

Bioinformatics Genomics Perl Computational Biology Genetics Data Analysis R Science Bioperl Cancer Research Databases Xml Population Genetics Informatics Management Software Design Science Communication Managerial Experience Data Management Government Contracting Agile Project Management Database Design Open Source Software Training And Development Neo4j Jira Employee Training Project Management Software Implementation Agile Methodologies Thought Leadership Team Leadership Cross Functional Team Leadership Trusted Business Advisor Federal Agencies Peer Review Git Json Data Architecture Data Modeling Data Science Amazon Web Services Scientific Writing Sequence Analysis Molecular Evolution Microbiology Mathematical Modeling Molecular Epidemology Xsd Laboratory Evolutionary Biology Editing Unix Shell Scripting Confluence Wikis Laboratory Experience Writing Writing For Publication Hiv/aids

Mark Jensen Education Details

  • University Of Chicago
    University Of Chicago
    Molecular Evolution
  • Fulbright Austria
    Fulbright Austria
    Mathematics
  • Heriot-Watt University
    Heriot-Watt University
    Mathematics
  • Washington State University
    Washington State University
    Mathematics

Frequently Asked Questions about Mark Jensen

What company does Mark Jensen work for?

Mark Jensen works for Frederick National Laboratory For Cancer Research

What is Mark Jensen's role at the current company?

Mark Jensen's current role is Director Data Science.

What is Mark Jensen's email address?

Mark Jensen's email address is ma****@****sra.com

What schools did Mark Jensen attend?

Mark Jensen attended University Of Chicago, Fulbright Austria, Heriot-Watt University, Washington State University.

What are some of Mark Jensen's interests?

Mark Jensen has interest in Family, Samson Society, Community Theater, Banjo, Piano.

What skills is Mark Jensen known for?

Mark Jensen has skills like Bioinformatics, Genomics, Perl, Computational Biology, Genetics, Data Analysis, R, Science, Bioperl, Cancer Research, Databases, Xml.

Who are Mark Jensen's colleagues?

Mark Jensen's colleagues are Luis Lopez, John Lappin, Eman Ismail, Hosam Hagag, Anu Puri, Lisa Mcshane, Raha Tehrani.

Free Chrome Extension

Find emails, phones & company data instantly

Find verified emails from LinkedIn profiles
Get direct phone numbers & mobile contacts
Access company data & employee information
Works directly on LinkedIn - no copy/paste needed
Get Chrome Extension - Free

Aero Online

Your AI prospecting assistant

Download 750 million emails and 100 million phone numbers

Access emails and phone numbers of over 750 million business users. Instantly download verified profiles using 20+ filters, including location, job title, company, function, and industry.