Stéphanie Feupé, Ph.D. Email & Phone Number

Aliso Viejo, California, United States

Supporting Pharma clients by providing customized solutions. Supporting new product validation.Supporting pipeline creation and improvements.

La Jolla

Ferhat Ay Lab, LJI* Investigating the role of genome compaction in gene regulation through eQTL mapping and allele-specific analysis of gene expression and 3D genomic data like HiC and HiChIP. * Integrating allelic imbalance in eqtl analysis can improve eqtl fine mapping. * Integration of H3K27ac mediated HiChIP interaction data in functional analysis of interesting genetic variants

Greater San Diego Area

My research involved the identification, analysis and characterization of expression short tandem repeats (eSTRs) across tissues using GTEx data. We built a catalog of eSTRs (short tandem repeats that influence gene expression) from GTEX data; expanding the pool of candidate variants in clinical screening.Gymrek lab @ UC San Diego

La Jolla

* Investigated influence of genetic variants such as SNPs, multi allelic variants, on various phenotypes including rare diseases pedigree.* Used a GATK-based pipeline for variants calling and filtering to identify candidate variants from whole genome sequencing (WGS/DNA-seq) from trios and quartets with children suffering from rare diseases.* Subsequently, built a complementary pipeline for structural variant screening. * Contributed to the development of information models for standardizing phenotype variables in the Genome Wide Association Studies (GWAS) database called dbGaP developed by NHLBI.* As part of PhenDisco development: * Developed protocols for user requirement analysis (including interview questionnaire development, requirement interpretation/prioritization, and target user identification) * Planned & coordinated overall workflow related to user interactions required for user requirement analysis

La Jolla

CS185: Advanced Bioinformatics Labs Teaching:Hands-on application of bioinformatics to biological problems using existing tools.Combining approaches to answer specific biological questions. Next Generation Sequencing, genetic data, sequence alignment, comparative genomics, expression analysis, genome-wide association studies and using big data

La Jolla

MED 264 : Teaching:Introduction to the field of biomedical informatics.Exploring the nature of biomedical information and their use in patients care and population study. Hands on projects to engage students in the current healthcare research environment

La Jolla

MED 264 : Teaching:Introduction to the field of biomedical informatics.Exploring the nature of biomedical informatics, its use in patients care and population study. Hands on projects to engage students in the current healthcare research environment, highlighting integration of genetic research..

Department Of Medicine, Division Of Biomedical Informatics, Ucsd

* Responsible for the design, creation and maintenance of a database that meets both project DMITRI (Diabetes Integrated Technology Research Initiative) and team (IDASH) requirements. * Data integration, sharing, and analysis toward personalizing diabetes care. Statistical analysis of large data sets (time series) using Matlab time series tool, Excel. Programming: SQL, MySQL, PHP, Matlab.* Analyzed personal monitoring device data like overnight continuous glucose and sleep stage data in subjects with type1 diabetes mellitus in real world conditions.

Exploratory research

SNP detection tools assessment. Assessment and comparison of different software and applications addressing SNPs and InDels discovery.