Alexander Gavrilenko

Alexander Gavrilenko Email and Phone Number

Bioinformatician | Machine Learning Engineer @ AIRI | MS in Computer Science @ AIRI
Alexander Gavrilenko's Location
Moscow, Moscow City, Russia, Russian Federation
About Alexander Gavrilenko

I am an ML Engineer specializing in bioinformatics, with over 3 years of experience developing machine learning models and analyzing data for proteomics and protein design tasks. With an MS in Computer Science from ITMO University, I have honed my skills in advanced machine learning methods, mathematical fundamentals, and effective project development and communication approaches. My academic journey is grounded in a BS in Natural Science, which provides me with a strong biological background and a deep understanding of molecular biology and genetics.From designing algorithms for T-cell epitope immunogenicity assessment to creating protein language model-based tools for DNA-binding protein detection, I am passionate about developing innovative solutions that deliver tangible outcomes in bioinformatics. My work bridges the gap between biology and machine learning, enabling impactful advancements in computational biology and healthcare.

Alexander Gavrilenko's Current Company Details
AIRI

Airi

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Bioinformatician | Machine Learning Engineer @ AIRI | MS in Computer Science
Alexander Gavrilenko Work Experience Details
  • Airi
    Research Engineer
    Airi Oct 2024 - Present
    Moscow, Moscow City, Russia
  • Novel Software Systems - Bioit R&D Company
    Bioinformatics Scientist
    Novel Software Systems - Bioit R&D Company Oct 2023 - Oct 2024
    Moscow, Moscow City, Russia
    ◦ Designed and implemented improvements to the protein domain classification algorithm resulting in 5% increase in accuracy. Leveraged the InterPro database to prepare high-quality annotated data for training and evaluation.◦ Developed a novel protein-DNA interaction prediction algorithm utilizing protein language models. This innovative approach has the potential to open new gene-regulatory proteins.
  • Institute Of Cytology And Genetics Sb Ras, Computer Proteomics Laboratory
    Bioinformatician
    Institute Of Cytology And Genetics Sb Ras, Computer Proteomics Laboratory Sep 2021 - Aug 2023
    Novosibirsk, Russia
    ◦ Developed an advanced algorithm with ESM-2 and TabNet for protein melting temperature prediction, achieving an MSE 50 points lower than existing methods◦ Enhanced the design of thermally stable photoproteins with ProteinMPNN, increasing the success rate by 25%◦ Accelerated protein data processing pipelines with Snakemake and Numba, reducing runtime by 30%

Alexander Gavrilenko Education Details

Frequently Asked Questions about Alexander Gavrilenko

What company does Alexander Gavrilenko work for?

Alexander Gavrilenko works for Airi

What is Alexander Gavrilenko's role at the current company?

Alexander Gavrilenko's current role is Bioinformatician | Machine Learning Engineer @ AIRI | MS in Computer Science.

What schools did Alexander Gavrilenko attend?

Alexander Gavrilenko attended Университет Итмо, Новосибирский Государственный Университет (Нгу), Bioinformatics Institute.

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