Bioinformatics Scientist
Current- Write custom scripts to analyze and visualize RNA-Seq data for unique needs of collaborators. Example: Wrote a script to obtain and plot broad coverage patterns within a large (100kb+) region of the genome.
- Lead role in determining and presenting standards for CLIA (clinical) RNA protocol.
- Analyze single-cell projects incl. scRNA-Seq/snRNA-Seq, CITE-Seq/ECCITE-Seq, and scATAC-Seq (alone or as part of Multiome) assays, often utilizing cell hashing multiplexing protocol. May include basic.
- Advise NYGC wet lab on results of testing new protocols and kits. Example: Compared rates of singlet recovery between different nuclei purification methods for hashed snRNA-Seq.
- Developed an automated pipeline to analyze RNA-Seq data, incl. extensive QC. Wrote script to write summary QC report in text/PDF and as HTML page incl. sortable tables.
- Taught workshop for wet lab biologists in basics of computational biology for RNA-Seq.
Apr 2023 - Present
