Hrishikesh Patil
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Hrishikesh Patil Email & Phone Number

MS in Bioinformatics @ Georgia Tech | RNA-seq Analysis, Structural Variant Detection | Transforming Genomic Data into Insights | Actively Seeking Full-Time Bioinformatics Positions at Zymo Research Corp
Location: Atlanta, Georgia, United States 6 work roles 2 schools
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MS in Bioinformatics @ Georgia Tech | RNA-seq Analysis, Structural Variant Detection | Transforming Genomic Data into Insights | Actively Seeking Full-Time Bioinformatics Positions
Location
Atlanta, Georgia, United States
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Hrishikesh Patil is listed as MS in Bioinformatics @ Georgia Tech | RNA-seq Analysis, Structural Variant Detection | Transforming Genomic Data into Insights | Actively Seeking Full-Time Bioinformatics Positions at Zymo Research Corp, a with 99 employees, based in Atlanta, Georgia, United States. AeroLeads shows a matched LinkedIn profile for Hrishikesh Patil.

Hrishikesh Patil previously worked as Bioinformatics Intern at Zymo Research Corp and Graduate Research Assistant at Georgia Institute Of Technology. Hrishikesh Patil holds Master Of Science - Ms, Bioinformatics, 4.0 (Current) from Georgia Institute Of Technology.

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About Hrishikesh Patil

👋 Hello there! I'm a Bioinformatics enthusiast with an interest in finding answers to complex genetic questions. 🧬 Currently pursuing a Master's at Georgia Tech, my academic journey is fueled by a passion for Genomics and Applied Bioinformatics.🔬 During my Bachelor's at IIT Guwahati, I delved into investigating Estrogen Receptor-I (ESR-I) Associated Genes in Breast Cancer. 🎓 Ranked 2nd in class, I learnt the skills of RNA-seq analysis and differential gene expression.🌐 As a MITACS Globalink Research Intern in Canada, I developed a pipeline for Novel Structural Variant Analysis in Yeast Hybrids using Python and Snakemake, uncovering genomic hotspots. 🚀🌱 My remote stint at NCBS Bangalore involved Selection analysis in rice-associated Methylobacterium strains, where I deciphered the intricate genetic association between bacterial strains and their hosts. 💻📚 Notably, my research on the effect of enterolactone(EL) on ERα-positive breast cancer cells was published in Gene (2023).💻 Tech-wise, I'm fluent in Python, R, and bash and well-versed in bioinformatics tools like Snakemake and GSEA. 📊🏆 Awards? JN Tata & KC Mahindra Scholarships. Leadership? Director General at IITG MUN. 🌟Let's connect and explore the exciting intersections of bioinformatics, technology, and innovation! 🚀 #Bioinformatics #Genomics #DataScience #Researcher #TechEnthusiast

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Zymo Research Corp
Zymo Research Corp
MS in Bioinformatics @ Georgia Tech | RNA-seq Analysis, Structural Variant Detection | Transforming Genomic Data into Insights | Actively Seeking Full-Time Bioinformatics Positions
irvine, california, united states
Employees
99
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6 roles

Hrishikesh Patil work experience

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Bioinformatics Intern

Current

Tustin, California, United States

• Bolstered epidemic monitoring for public health customers by developing a SARS-CoV2 variant analysis workflow in Nextflow, enabling efficient identification and tracking of COVID-19 strains in human metagenomic samples.• Accelerated outbreak detection timelines by engineering a viral detection workflow for wastewater analysis, leveraging Docker biocontainers and advanced phylogenetics to identify emerging strains and potential health risks.

Jun 2024 - Present

Graduate Research Assistant

Atlanta, Georgia, United States

• Assembled and annotated 450+ genomes of Pseudomonas aeruginosa epidemic strains to curate a dataset for downstream virulence analyses.• Developing a pipeline using Machine Learning algorithms such as random forests and neural networks to identify the genes responsible for virulence and transmission in epidemic strains of P. aeruginosa.

Jan 2024 - May 2024

Undergraduate Researcher- Thesis Project

Guwahati, Assam, India

Prof. Anil Mukund Limaye, Molecular Endocrinology LabTitle: Proliferative response of ERα-positive breast cancer cells to 10 μM enterolactone, and the associated alteration in the transcriptomic landscape

Aug 2022 - May 2023

Mitacs Summer Research Intern

Quebec, Canada

Prof. Christian Landry, Landry Lab, Université LavalTitle: Structural Variant Analysis in Yeast Hybrid strains• Built an extensive parallelised pipeline using a workflow manager Snakemake to incorporate five structural variant callers for structural variant (SV) detection in long-read Oxford Nanopore data of yeast hybrid strains.• Integrated the pipeline’s results in Python and generated an optimised consensus of tools to cluster SVs based on a distance threshold and successfully identified novel structural variants in each hybrid strain.• Visualised the novel SVs on a genome scale view to characterise potential hotspots for SV formation.

May 2022 - Aug 2022

Summer Research Intern

Bengaluru, Karnataka, India

Prof. Deepa Agashe, Adaptation Lab, NCBS BangaloreTitle: Selection analysis in rice-associated Methylobacterium strains• Developed a comprehensive workflow comprising genome assembly, annotation, ortholog detection, phylogenetic tree inference and selection analysis to run on 15 long-read (Nanopore) and short-read (HiSeq) sequenced genomes.• Implemented (dN/dS) based site models of selection on 1217 orthologous genes obtained from the Methylobacterium genome set and performed likelihood ratio tests to identify a group of 208 orthologous genes under positive selection.• Investigated their function to provide insights into the basis of association between the host and its bacterial strains.

May 2021 - Jan 2022

Undergraduate Researcher

Guwahati, Assam, India

Prof. Sachin Kumar, Viral Immunology Lab, IIT GuwahatiTitle: In silico characterisation of Virokines and Viroporins• Performed extensive literature review to understand the role of virokines and virporins in virulence and transmission.• Identified conserved and variable regions in human and viral interleukin genomes by sequence alignment and further investigated these regions to understand their compositional and structural differences.• Investigated the promoter sequence in interleukin genomes and characterised CpG islands to understand transcriptional regulation of viral and human interleukins.

Apr 2021 - Jun 2021
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2 education records

Hrishikesh Patil education

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What company does Hrishikesh Patil work for?

Hrishikesh Patil works for Zymo Research Corp.

What is Hrishikesh Patil's role at Zymo Research Corp?

Hrishikesh Patil is listed as MS in Bioinformatics @ Georgia Tech | RNA-seq Analysis, Structural Variant Detection | Transforming Genomic Data into Insights | Actively Seeking Full-Time Bioinformatics Positions at Zymo Research Corp.

Where is Hrishikesh Patil based?

Hrishikesh Patil is based in Atlanta, Georgia, United States while working with Zymo Research Corp.

What companies has Hrishikesh Patil worked for?

Hrishikesh Patil has worked for Zymo Research Corp, Georgia Institute Of Technology, Indian Institute Of Technology, Guwahati, Université Laval, and National Centre For Biological Sciences.

Who are Hrishikesh Patil's colleagues at Zymo Research Corp?

Hrishikesh Patil's colleagues at Zymo Research Corp include Maria Rivera, Brett Farthing, Oceanus Zhang, Lingling Xu, and Charles L..

How can I contact Hrishikesh Patil?

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What schools did Hrishikesh Patil attend?

Hrishikesh Patil holds Master Of Science - Ms, Bioinformatics, 4.0 (Current) from Georgia Institute Of Technology.

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