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Joe is currently a Senior DevOps Engineer managing the Privacy Hub AWS environment; planning and strategy, security, implementation, data management, and user support. The environment is designed to enable data scientists to access heath data in a manner that's effective for the data scientist while still keeping the data secure in a SOC2-type 2 and ISO27001 certified environment.Joe initially studied BSc Biochemistry at the University of Nottingham before moving onto Bioinformatics MRes and Ph.D. at the University of Leeds. He then was the bioinformatician for the Genomic Sequencing Unit at the University of Dundee for four years, leading the development of NGS sequencing analysis pipelines and the sequencing centre computing infrastructure. He then worked as a bioinformatician at the University of St Andrews for two years doing research projects whilst also maintaining and improving the multi-user HPC computing infrastructure for the bioinformatics unit before moving on to work at HIC using his expertise in computing and genomics to help with the research infrastructure.
Privacy Hub By Datavant
View- Website:
- datavant.com
- Employees:
- 6827
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Senior Devops EngineerPrivacy Hub By DatavantDundee, Gb
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Senior Devops EngineerPrivacy Hub By Datavant Aug 2022 - PresentResponsible for managing, improving and maintaining the Privacy Hub AWS environment for data scientists. Involved in SOC2 and ISO27001 compliance and audits, and security monitoring. Responsible for enabling systems to allow data scientists access to the resources they need while keeping the infrastructure and client's data secure. -
Devops EngineerPrivacy Hub By Datavant Feb 2021 - Aug 2022United KingdomResponsible for running, improving and maintaining the AWS environment for data scientists. Involved in SOC2 and ISO27001 compliance and audits, and security monitoring. Heavily involved in automating systems to allow data scientists access to the resources they need while keeping the infrastructure and client's data secure.
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Dev-Ops And Genomic Data ProgrammerHealth Informatics Centre (Hic) - University Of Dundee Jun 2019 - Feb 2021Dundee, United KingdomInvolved in the running of the Trusted Research Environment providing researchers access to health data in a secure manner. -
BioinformaticianUniversity Of St Andrews Dec 2016 - Jun 2019St Andrews, FifePrimarily involved in analysing data for projects submitted to the St Andrews BioinformaticsUnit, often designing bespoke pipelines for the analysis (Python, R). The work has spanned alarge range of topics including analysis of bacterial-infection isolates from hospitals to trackinfection out-breaks and the analysis of large RNA-seq data sets from non-standard organisms(Chicken, bacteria). Part of my time was spent providing bioinformatics support for colleaguesas well as teaching bioinformatics-focused courses to wider audiences. I am also currentlythe system administrator for the 192-core multi-user bioinformatics cluster. -
Postdoctoral ResearcherThe University Of Dundee Apr 2013 - Dec 2016Dundee, United Kingdom{Principally responsible for the creation and maintenance of the primary-analysis sequencing pipeline for the Genomic Sequencing Unit. During the last 3 years I have set up, from scratch, a pipeline for the first stage of analysis for DNA sequencing data. I have also created a platform for the quality-control of the sequencing data produced for each of the sequencing runs; simplifying and streamlining the process of accessing the data produced. I was also responsible for providing feedback on any errors and potential improvements to the laboratory, as well as making the data available to customers. This required working with large amounts of data and collecting all available meta-data to help improve the quality of data given to customers. -
Ph.D. StudentUniversity Of Leeds Oct 2008 - Apr 2013The majority of my Ph.D. work was focused around epigenetic analysis using ChIP-Seq data. Using a simple enrichment metric based on the number of reads that occur over a gene that I developed it is possible to predict RNA polymerase II binding using transcription factor and histone modification data. Using a simple linear model on 8 markers (5 transcription factors, 3 histone modifications) it is possible to account for 78% of the variance in RNA polymerase II binding using just histone modifications. A larger analysis using 47 ChIP-Seq datasets for human embryonic stem cells (23 transcription factors, 24 histone modifications) using LASSO regression, was able to account for 80% of the variance in RNA polymerase II binding. A subsection of my Ph.D. was focussed on generating a method to predict hot-spot; residues, the residues which contribute the largest energy to a binding in protein-protein interfaces.
Joseph Ward Skills
Joseph Ward Education Details
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Bioinformatics
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Pass With Distinction - Top Of Class
Frequently Asked Questions about Joseph Ward
What company does Joseph Ward work for?
Joseph Ward works for Privacy Hub By Datavant
What is Joseph Ward's role at the current company?
Joseph Ward's current role is Senior DevOps Engineer.
What is Joseph Ward's email address?
Joseph Ward's email address is io****@****ail.com
What schools did Joseph Ward attend?
Joseph Ward attended University Of Leeds, University Of Leeds, University Of Nottingham.
What are some of Joseph Ward's interests?
Joseph Ward has interest in Mobile And Tabletop, Gaming, Painting (Miniatures In Particular).
What skills is Joseph Ward known for?
Joseph Ward has skills like Molecular Biology, Next Generation Sequencing Analysis, Python, R, Perl, Java, Matlab, Statistics, Linux, Latex, Git, Machine Learning.
Who are Joseph Ward's colleagues?
Joseph Ward's colleagues are Cortney Vasile, Fendjy Louis-Juste, Autumn Goodwin, Gabrielle Zicaro, Evin Hale, Pmp, Emilia G., Hannah Pestanas.
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Joseph Ward
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Joseph Ward
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