Jacob Bumgarner work email
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Jacob Bumgarner personal email
I'm a highly focused and passionate computational biologist at Bristol Myers Squibb, generating reverse translational and discovery insights by analyzing late-stage clinical and preclinical data. I am experienced in bioinformatics, ML, and software engineering.I am skilled in Python and R for bioinformatics, data analytics, image analysis, and ML/DL. I have experience working with RNA seq (bulk, single cell, and spatial), proteomic, and ADaM format late-stage clinical biomarker data.I completed my Ph.D. in Neuroscience at West Virginia University, where I Independently and collaboratively designed and conducted computational, behavioral, and imaging experiments to address research questions in the fields of neuroscience, circadian rhythms, pain, and oncology. My graduate work is highlighted by my publication of VesselVio, an open-source Python application for the analysis and visualization of vasculature imaging datasets (details below).Some of my open-source analytical and research software development projects can be found below: GitHub: https://github.com/JacobBumgarnerVesselVio Website: https://jacobbumgarner.github.io/VesselVio/Personal Website: jacobbumgarner.com
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Senior ScientistBristol Myers SquibbPrinceton, Nj, Us -
ScientistBristol Myers Squibb Sep 2023 - PresentPrinceton, New Jersey, United States- Analyzes phase 2 & 3 clinical and preclinical data to generate reverse translational and early discovery insights for autoimmune and neurological indications.- Collaborates with clinical biomarker leads and early discovery stakeholders to drive data-informed decisions on asset differentiation, indication selection, and indication expansion.- Uses R/Python and modern statistical/ML methodologies to analyze bulk RNA seq, single cell/nuclei RNA seq, proteomics, and ADaM format biomarker data. -
Bioinformatics Co-OpEmd Serono, Inc. Nov 2022 - Aug 2023United States- Developed and maintained an RShiny application for the interactive and configurable analysis and visualization of autoimmune clinical RNA-Seq and microarray gene expression datasets.- Developed an interactive analysis pipeline that allows users to define custom groups and run a variety of bioinformatics algorithms, including differential expression, cellular deconvolution, GSEA, and graph-based pathway analyses, to facilitate drug development and indication selection.- Directly communicated with scientific stakeholders, seniors, and peers to implement feature requests, resolve bugs, and enhance user experience. -
Graduate Research FellowWest Virginia University Jul 2019 - Jul 2023Morgantown, West Virginia, United States- Independently and collaboratively designed and conducted dozens of computational, behavioral, and imaging experiments to address research questions in the fields of neuroscience, circadian rhythms, pain, and oncology.- Leveraged analytics and machine learning frameworks in Python and R to run quality control, analyze, and visualize large-scale imaging, next-generation sequencing, and tabular datasets.- Authored 24 publications, including 9 first-authored articles; Awarded 2 fellowships and 1 departmental award. -
Undergraduate Research AssistantWest Virginia University May 2018 - Aug 2019
Jacob Bumgarner Education Details
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Neuroscience -
Piano Performance
Frequently Asked Questions about Jacob Bumgarner
What company does Jacob Bumgarner work for?
Jacob Bumgarner works for Bristol Myers Squibb
What is Jacob Bumgarner's role at the current company?
Jacob Bumgarner's current role is Senior Scientist.
What is Jacob Bumgarner's email address?
Jacob Bumgarner's email address is ja****@****wvu.edu
What schools did Jacob Bumgarner attend?
Jacob Bumgarner attended West Virginia University, West Virginia University.
Who are Jacob Bumgarner's colleagues?
Jacob Bumgarner's colleagues are Lindsay Hainzinger-Johnson, Michael Keats, Basit Abdul, Daniel Gatens, Agnieszka Sandmann, Aaron Holm, Yanling Huang.
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