BIOMEDICAL ONTOLOGYDesigned or improved many elements of the Ingenuity Ontology, a graph database of knowledge from a large repository of biomedical scientific literature. Its structured content enables sophisticated genomic-data interpretation, including clinical decision support.Designed and implemented ETL processes to import data from a wide variety of structured and semi-structured biomedical databases into the ontology.NLPBuilt a translator of complex terminology into computable constellations (graphs) of component concepts linked via semantic relationships.Built ontology-leveraged machine-learning pipeline to identify topic-relevant articles.Built automated pipeline to ingest and index biomedical journal articles.PROJECT MANAGEMENTLead cross-functional team to shepherd development of topic-specific clinical-literature curation software, from requirements through delivery.

At Berkeley I researched proteins that physically manipulate DNA. Specifically, I worked on the structure and function of type II DNA topoisomerases.