Jeremy E.

Jeremy E. Email and Phone Number

Data Scientist at The National Institutes of Health @ The National Institutes of Health
bethesda, maryland, united states
Jeremy E.'s Location
Morrisville, North Carolina, United States, United States
Jeremy E.'s Contact Details

Jeremy E. personal email

n/a
About Jeremy E.

I am currently a Senior Computational Biologist at Syngenta Biotechnology. I have over 10 years of experience in Bioinformatics, Computer Science, Biology, and Statistics. I also have 5 years’ experience in Project Management leading global projects and software development in support for research. My solid and diverse educational and corporate background provides opportunities to either lead or be part of international teams from multiple disciplines working together to make a difference and solve problems. I really enjoy interacting with many different cultures and backgrounds. In the past decade, I have worked to diligently to improve and focus on three key areas of personal growth. These areas are enhancing my knowledge and understanding on being a professional, learning more about bioinformatics, systems biology, and high performance computing environments, and creating and implementing solutions for novel ideas. Highlights of my career thus far are:• Project Management Professional (PMP). • Leading global teams spanning research and development.• Interacting with many different cultures and professional backgrounds• Business analyst and process modeling within a matrix organization.• Develop and optimize new and existing software and applications for data mining ‘omics and phenotypic data. • Design, implement, optimize, and troubleshoot infrastructure for research.• Global data manager for all bioinformatics data• Lead and provide advice on ways of working for colleagues who leverage the HPC and grid computing environments.• Design and implement data organization and active management of it.• Create applications for data integration• IT policies, best practices and procedures including data security and integrity

Jeremy E.'s Current Company Details
The National Institutes of Health

The National Institutes Of Health

View
Data Scientist at The National Institutes of Health
bethesda, maryland, united states
Website:
nih.gov
Employees:
22764
Jeremy E. Work Experience Details
  • The National Institutes Of Health
    Data Scientist
    The National Institutes Of Health Dec 2019 - Present
  • Syngenta
    Open Innovation Lead
    Syngenta Aug 2015 - Dec 2019
    · Actively pursuing expensive bottlenecks or opportunities for significant cost savings within Syngenta specifically where an algorithm could either automate or speed up an existing process.· Facilitating and implementing the crowdsourcing of software development, algorithms, technology and competitive intelligence landscapes, strategic collaborations and partners.· Providing new innovative strategies, technologies, and techniques to Syngenta.· Redhat Openshift, AWS, Docker, and Jupyterhub· Bridging the gap between the external world and R&D IS group.· TRIZ and Systematic Innovation Methodologies· System Dynamics· Internal Crowdsourcing· Searching for new technologies that could benefit Syngenta or assisting with forming strategic collaborations with other companies
  • Syngenta
    Senior Computational Biologist
    Syngenta Apr 2013 - Aug 2015
    Raleigh-Durham, North Carolina Area
    • Temporary Project Manager of Variant Discovery Software - Agile Project Manager of the software development team. - Leading, coaching and communicating across multiple teams, meetings and disciplines - Work stream lead on infrastructure and software scalability test for large genotyping by sequencing• Bioinformatics Data Manager - Provides advice to Colleagues using the High Performance Computing Environment - NGS Data Management and Organization - Coordinating the movement of data globally internally and externally to Syngenta - Application owner and developer of the Bioinformatics Data Catalog * Houses Experimental and Metadata for NGS * Catalogs the major analysis types and results * Actively checks for data integrity and availability
  • Basf
    It Solutions Applications Developer
    Basf Jan 2012 - Apr 2013
    Raleigh-Durham, North Carolina Area
    - Global IT Project Manager of Rice leading an international software development team implementing the transgenic rice platform into an existing global tool- Application Owner of the Global Development Tool- Providing support to Plant Breeders
  • Basf
    Bioinformatics Applications Developer
    Basf Jun 2007 - Jan 2012
    Raleigh-Durham, North Carolina Area
    • Lead, Project Manager, Creator, Developer, IT and Data Owner of the Forward Genetics Software Tool - Large relational database 50+ tables storing several billion records. - Oracle Database with Oracle Apex as the Graphical Interface - Advanced data mining capabilities with highly optimized queries - Data Types include NGS derived SNP markers, Chip derived SFP markers, genotypes, phenotypes, plant and gene ontology, gene and transcript models and locations across multiple genome versions, expression data, GWAS outputs from TASSEL, external data from Gramene, and highly integrated with multiple systems.• IT Owner and Project Lead for Several custom or commercial applications and tools - Customized Microarray Database, GeneData Expressionist, Genevestigator, LemnaTec Imaging System, SAS BI Administrator, GPU and High Performance Computing• Designed and Coordinated Unix/Linux server class hardware/software• Researched more efficient and effective ways of analyzing large data sets especially GWAS and other traditional computational biology techniques using Cloud and GPU high performance computing, Oracle Data Mining, and R • Provided ongoing support to the Bioinformatics community
  • Basf
    Bioinformatics Senior Research Associate
    Basf Oct 2005 - Jun 2007
    Raleigh-Durham, North Carolina Area
    • Provide statistical expertise and scripts to the scientists on a daily basis using any combination of Mixed Models and various regression models, Principle Components, Multiple testing procedure, SAS GRAPHS, PERL, R/Bioconductor • Aid Scientists on Design of Experiments for both field trials and expression analysis.• Responsible for running and implementing various software packages such as BLAST on a Unix cluster using the Sun Grid Compute Utility• Created several MYSQL databases to temporarily store and query expression data for interesting gene patterns• Creating and implementing PL/SQL code using BLAST data mining tool in ORACLE 10g
  • Duke University
    Bioinformatics Research Technician
    Duke University Oct 2003 - Oct 2005
    • Statistical analysis of microarrays using SAS mixed models, PCA, SAS GRAPH• Created an automated Affymetrix microarray meta-analysis pipeline including SAS Mixture models, R/Bioconductor normalization and differential expression techniques, Outlier analysis, Volcano, Bivariate, MVA, and box plots, multi-testing correction factors, and basic relevance transcriptional networks• Provided statistical insight to students and professors on how to analyze and interpret large datasets• Responsible for administering, implementing, and running various software packages such as BLAST, Dialign, Chaos, R/Bioconductor, Emboss, Primer 3, Oracle, PostgreSQL, MySQL, Perl, Unix shell scripting, and any additional tool publically available on either a Linux or a Unix operating environment using the Sun Grid Compute Utility if applicable• Developed MYSQL databases for storage and querying of expression data• Perl scripting to aid scientists
  • Syngenta
    Intern/Graduate Student/Bioinformatican
    Syngenta May 2000 - Sep 2003
    Raleigh-Durham, North Carolina Area
    • Database Administrator and Developer of the RNA LIMS System written in MySQL, Perl DBI and CGI.• Developed Statistical algorithms for processing and analyzing microarray data using SAS.• Created Perl scripts to aid molecular biologists in their data collection, analysis, and results• Prepared miniprep DNA, performed PCR, and followed various other protocols standard to molecular biology.• Performed procedures for reporter gene detection.• Maintained fly stocks in the lab for the Invertebrate Targets group. • Set up various crosses and analyzed their offspring using SAS.

Jeremy E. Education Details

Frequently Asked Questions about Jeremy E.

What company does Jeremy E. work for?

Jeremy E. works for The National Institutes Of Health

What is Jeremy E.'s role at the current company?

Jeremy E.'s current role is Data Scientist at The National Institutes of Health.

What is Jeremy E.'s email address?

Jeremy E.'s email address is je****@****nih.gov

What schools did Jeremy E. attend?

Jeremy E. attended North Carolina State University, North Carolina State University, North Carolina State University.

Who are Jeremy E.'s colleagues?

Jeremy E.'s colleagues are John Cole, Joël Virothaisakun, Rezki Ekhy, Islam Elkomy, Melissa Blain, Joshua Fuller-Deets, Melissa Bates.

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