Johnathan Lyon, Ms/Phd

Johnathan Lyon, Ms/Phd Email and Phone Number

Software Engineer, making creative things for creative people @ Verily
Johnathan Lyon, Ms/Phd's Location
Durham, North Carolina, United States, United States
Johnathan Lyon, Ms/Phd's Contact Details

Johnathan Lyon, Ms/Phd work email

Johnathan Lyon, Ms/Phd personal email

About Johnathan Lyon, Ms/Phd

I am a hybrid engineer/scientist/artist and former academic currently working in software engineering. My original training is in Computer Music with emphasis on building software tools and signal processing algorithms for spectral/spatial manipulation. I have deep training in traditional Computer Science and significant experience in machine learning/AI with emphasis on reinforcement learning and signal classification in the computational neuroscience and robotics domains. My phd/post-doctoral training was in Neuroengineering (developing electrical therapeutics for brain tumors) with additional work in Bioinformatics.Core Competencies in software engineering, scientific computing, skunkworks & experimental designCompetency with multimodal data science/analysis/visualization, project management & cross-discipline collaboration, C, C++, javascript, R, Matlab, SQL, various python frameworks (django, numpy, pandas, etc), machine learning methodologies, theoretical computer science including data structures/algorithms, technical writing, general multimedia design/engineering (audio, video, image, mechatronic, 3D), Bioengineering (Neural, Oncology, Computational, NGS), backend engineering, sonic computing, strong general mathematical, engineering, and scientific literacy.

Johnathan Lyon, Ms/Phd's Current Company Details
Verily

Verily

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Software Engineer, making creative things for creative people
Johnathan Lyon, Ms/Phd Work Experience Details
  • Verily
    Senior Software Engineer
    Verily Sep 2024 - Present
    Dallas, Texas, Us
  • Gluu
    Software Engineer | Founder
    Gluu Apr 2023 - Present
    • Founded research collective for development of novel and experimental software tools for creatives• Leading R&D on VST software for spectral manipulation, cross-synthesis, and novel transient/noise tools.• Released an extensive open source library for spectral modeling and transformation of arbitrary digital audio signals into compositionally-controllable synthesis objects. [python, numpy] • Prototyped a machine-learned controller using a genetic-algorithm/gradient descent framework for learning arbitrary computer synth parameters for approximating arbitrary input audio files. [python, Csound]• Prototyped a 3D audio ray-tracer for generating reverberant/reflective impulse responses & HRTFs based on traversal of virtual architecture. [python, Blender]
  • Recurse Center
    Software Engineer | Participant
    Recurse Center Jan 2023 - Mar 2023
    New York, Ny, Us
    At this 12-week retreat for curious programmers, I worked on some personal software projects and spending dedicated time sketching and learning around new software ideas:• Implemented an open source, browser-based bandcamp GUI using asynchronous crawling/scraping to provide an improved music recommendation and discovery UX workflow. [python, javascript, django, Docker, PostgreSQL, requests, HTML, CSS, Bootstrap5, d3.js, celery, Redis, daphne, websockets]• Obtained Google Cloud Leader & AWS Certified Cloud Practitioner (CLF-C01) certifications.
  • Emory University
    Scientist
    Emory University Nov 2021 - May 2022
    Atlanta, Ga, Us
    In charge of managing the initiation on our NIH Transformative R01 grant on electrotactic therapies for diffuse brain tumors, focused on tissue analysis from prior in vivo experiments at Duke, and advancing work on developing custom 3D-printable systems for in vitro study of electrotactic and chemotactic cell behaviours (invention disclosures: INV2301005 & INV2301003).
  • Duke University
    Research Scientist, Biomedical Engineering & Associate, Initiative For Science & Society
    Duke University Nov 2017 - Jun 2021
    Durham, North Carolina, Us
    • Devised, directed, performed and analyzed experimental laboratory research in the context of nervous system pathologies and cancer.• Chief architect of a project to 'tractor beam' brain tumors, where I developed custom software/hardware control system for administering and monitoring multi-animal implantable electrical stimulation experiments. For this project, I architected and received a $1.8M Transformative R01 grant from the National Institutes of Health. [python, C, embedded systems, 3D printing]
  • Duke University
    Visiting Researcher
    Duke University Aug 2016 - Oct 2017
    Durham, North Carolina, Us
  • Neurological Biomaterials And Cancer Therapeutics Laboratory, Georgia Institute Of Technology
    Graduate Research Assistant
    Neurological Biomaterials And Cancer Therapeutics Laboratory, Georgia Institute Of Technology Sep 2010 - Oct 2017
    • Designed/developed/maintained numerous custom multiphysics modeling, data processing, analysis, and visualization software/pipelines for applied computer vision of cell and tissue analyses, munging, statistical analysis, and visualization of numerous high throughput molecular/next-gen sequencing assays, included in several peer-reviewed scientific publications. [python, numpy, scipy, pandas, matplotlib, R, Matlab, Galaxy, COMSOL]• Developed device-based strategies for treatment of brain tumors• Prototyped and characterization of custom in vitro electrical stimulation systems• Characterized molecular mechanisms of cell motility in electrical fields (galvanotaxis)• Managed and educated student interns (high school and undergraduate)Skills & Expertise: Brain Tumor Physiology & Models, Electric Stimulation-Based Therapies, Bioelectrochemistry, Flow Cytometry, 3D Cell Culture, Immunocytochemistry, Histology, Fluorescent Microscopy, Circuit Design/Characterization, AVR Programming, Experimental Design, Data Analysis and Modeling in Matlab, R & Python, Proteomic/Transcriptomic Data Analysis, Tumor Inoculations, Neuroinflammation, Peripheral Nerve Injury/Scaffolds, Regenerative Medicine, Biomaterials, Small Animal Handling/Surgery, Supervision/Project Management
  • Takeda Pharmaceuticals
    Graduate Intern - Next-Generation Sequencing Subgroup Lead - External Consultant
    Takeda Pharmaceuticals Jul 2015 - Mar 2016
    Tokyo, Jp
    • Developed chemical simulation and optimization GUI framework for industrial inertization protocols which led to major protocol innovation. [Matlab]• Advised on initiation of a computational team for next-generation sequencing; Developed a library for simulation and analysis of mutated reads and prototyped strategies for novel sequence identification and hierarchical classification of NGS data. [python, Matlab]Skills & Expertise: Software Engineering, GUI Development & Data Analysis (Python, R, Matlab), Bioinformatics Analysis for Genomics (Bowtie, Kallisto, Picard, Firehose, SAMTools, Galaxy)
  • Graduate Student Government Association, Georgia Institute Of Technology
    President
    Graduate Student Government Association, Georgia Institute Of Technology Apr 2014 - Apr 2015
    • Served as Chief Executive and primary advocate/representative of the Graduate Student Body• Responsible for activities of the Graduate Student Government • Acted as steward of the $5M+/year Student Activity Fee Budget• Had approval rights on Student Legislature and Policy• Responsible for managing student appointments to Institute-Wide and SGA Internal committees.
  • Lunging Bull
    Full Stack Engineer
    Lunging Bull Sep 2012 - Apr 2014
    • Co-ran an independent firm specializing in providing web presence solutions for early stage startups. • Developed iterative designs, planning, and implementation of full-stack development, interface designs for web & mobile, and information architecture typically using php, MYSQL, HTML, CSS, and javascript/JQuery.
  • Neural Systems Laboratory, Dept. Of Computer Science, University Of Washington
    Graduate Research Assistant
    Neural Systems Laboratory, Dept. Of Computer Science, University Of Washington May 2009 - Jun 2010
    • Developed virtual reality and humanoid robotic systems controlled by brain-computer interfaces. Ran experiments and adapted machine-learning algorithms for data analysis of patient EEG/ECoG data for these systems including use of hierarchical classification models of spatial time-series data, and online reinforcement learning with partially observed markov decision processes. [C, C++, Matlab]• Implemented a communication platform to allow flexible networked control of our robotic systems. [C, C++]Skills & Expertise: Humanoid Robotics, Machine Learning, Real-Time EEG/ECoG, Social Cognition, C/C++/Python Programming, Experimental Design, Supervision/Project Management, Computer Vision, Software Development in RT Linux, OSX, Windows
  • Dxarts, University Of Washington
    Senior Computing Specialist/Technical Coordinator
    Dxarts, University Of Washington Mar 2007 - Jul 2009
    • Provided Broad IT/Engineering/Software/Design Infrastructure support and technical solutions and support for 200+ faculty, students & staff• Author and chief architect of departmental grants for over $400K in funding• Collaborated on research to integrate wavefield and ultrasonic hardware and algorithms for spatial audio art installations to enable more precise spatial placement of sonic elements.• • Provided algorithmic improvements to software tools and DSP algorithms for spectral/spatial manipulation of sound, including granular and envelope interpolation libraries, algorithmic speed-ups for spectral analysis, and swarm/granular control system for spatial sound. [Csound, Lisp, C, python, MaxMSP]• Acted as a technology liaison to foster interdisciplinary collaborations across campus• • Led technical arm for myriad art installation and performance projects that incorporated 3D-auditory components, including several experimental music concerts/installations (quadraphonic, ambisonic, diffusion, HRTF, and surround-based formats), 3D soundfield & binaural recordings for experimental film and audio projects, a dance performance with interactive 3D projection and sound elements, and a telematic 3D-audio spatial feedback installation where listeners in Cleveland & Seattle were able to share simultaneous sonic space.• Conducted auditory/visual psychophysics research into auditory/visual timing using custom software interface that integrated a 3D ambisonic array with VR-goggles.• Designed, funded, built-out and operated department multi-platform server infrastructure (Linux, Apple, Windows), custom render farm, and multiple digital arts computing laboratories including a 24.4-array, 3D-capable soundlab with matched performance rig, and 10.1 mixing/master room. [Java, IT mgmt]• Developed and maintained custom software for equipment purchasing, inventory, and rental. [php, MySQL]

Johnathan Lyon, Ms/Phd Skills

Biomedical Engineering Cell Culture Matlab Microscopy Data Analysis Tissue Engineering Biomaterials Molecular Biology Pcr Experimental Design Regenerative Medicine Biotechnology Flow Cytometry Project Management Computer Science Bioengineering Brain Tumors Multi Color Flow Cytometry Computational Neuroscience Python Electrical Stimulation Spectral Modeling Circuit Design Cancer Biology

Johnathan Lyon, Ms/Phd Education Details

  • Georgia Institute Of Technology
    Georgia Institute Of Technology
    Biomedical Engineering (Neuroengineering)
  • University Of Washington
    University Of Washington
    Computer Science (Computational Neuroscience)
  • University Of Washington
    University Of Washington
    Computer Science
  • University Of Washington
    University Of Washington
    Digital Signal Processing (General Studies)
  • University Of Washington
    University Of Washington
    Digital And Experimental Arts And Media (Dxarts)

Frequently Asked Questions about Johnathan Lyon, Ms/Phd

What company does Johnathan Lyon, Ms/Phd work for?

Johnathan Lyon, Ms/Phd works for Verily

What is Johnathan Lyon, Ms/Phd's role at the current company?

Johnathan Lyon, Ms/Phd's current role is Software Engineer, making creative things for creative people.

What is Johnathan Lyon, Ms/Phd's email address?

Johnathan Lyon, Ms/Phd's email address is jl****@****uke.edu

What schools did Johnathan Lyon, Ms/Phd attend?

Johnathan Lyon, Ms/Phd attended Georgia Institute Of Technology, University Of Washington, University Of Washington, University Of Washington, University Of Washington.

What are some of Johnathan Lyon, Ms/Phd's interests?

Johnathan Lyon, Ms/Phd has interest in Education.

What skills is Johnathan Lyon, Ms/Phd known for?

Johnathan Lyon, Ms/Phd has skills like Biomedical Engineering, Cell Culture, Matlab, Microscopy, Data Analysis, Tissue Engineering, Biomaterials, Molecular Biology, Pcr, Experimental Design, Regenerative Medicine, Biotechnology.

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