Jean-Michel Carter Email and Phone Number
Scientist with molecular and data science skills acquired over 7 years of PhD/Postdoc research in Academia, mostly working on omics projects independently and collaboratively.I have adapted to several research areas (developmental biology, ageing and epitranscriptomics) with different model systems implementing a variety of molecular and sequencing technologies. In complement, I have developed the ability to effectively interrogate various sequencing data (Sanger/NGS/Nanopore) using custom BASH/Python/R scripting to produce publication level outputs. I can work locally or remotely on UNIX-based machines and HPC clusters (SLURM).I am passionate about scientific and technological developments and their potential to benefit the human condition with a special focus on sequencing and genetics. I continuously evolve my knowledge and technical skills to stay on the edge of innovation and inspire my own ideas. I also enjoy sharing my passion with peers and students; providing advice, supervision, lectures, presentations with an optimistic and friendly approach.Looking at the wider picture of my work and actions is an integral part of my person. Science is a crucial component of society that needs nurturing to inform and improve future society. To facilitate this I have led and contributed to local and national initiatives that:1) seek to enhance scientific research culture2) seek to enhance society by engaging with scientists3) seek to develop the public image of scienceMember of the Genetics Society UK http://www.genetics.org.ukRecent activity:Currently developing Machine Learning skills.
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Research FellowNanyang Technological UniversitySingapore -
Research FellowNanyang Technological University Apr 2020 - Present -
Research AssociateUniversity Of Bath Apr 2016 - Aug 2019Bath, United KingdomResearch (Hussain Lab.) - Investigating RNA modifications using sequencing techniques and bioinformatics:• First study profiling m5U RNA modifications at single nucleotide resolution across the human transcriptome, using novel NGS-based CLIP techniques: Performed experiments, analyses (bash/R) and co-authored manuscript. Initial data processed in collaboration with the Francis Crick Institute (Üle).• First study benchmarking direct human genome sequencing with Oxford Nanopore Tech. (ONT) MinION: Performed all analyses independently (bash, various tools and R) and co-authored manuscript.• Created pipelines to detect m6A RNA modifications in MinION data from novel CLIP-based experiments: Tested and troubleshooted different pipeline configurations and tools (bash/Python).• Benchmarking m5C identification from direct RNA sequencing using MinION: Performing all analyses independently using tombo, Python, bash and R (in preparation)• Supervised BSc, MSc experimental and bioinformatic student projects: Mostly teaching bioinformatics but also genotyping and characterising Zebrafish mutants.Teaching, Public Engagement & Other Activities:- Delivered lectures on Sequencing Technologies & Bioinformatics to the Intellectual Property Office (10/05/2017).- Delivered lecture on applying for postgraduate education to prospective international students (18/07/2017).- Founded the Postdoctoral Society for the Dept. of Biology & Biochemistry in October 2018. Chairing the organising committee.- Active Committee Member of Bath Science in Policy since September 2017. Helped organise 10+ events including chairing a panel discussion on AI & Policy (13/11/2018), attending an APPG on Chemical Weapons (19/01/2018) and networking with policy stakeholders.- Supervised 5 Undergraduate Project Students & 2 MRes Project Students- Entered the Royal Society "The Pitch" Competition for Research Culture: Changing Expectations Conference. -
Postdoctoral ResearcherUniversity Of Oxford Nov 2014 - Jun 2015Research (Aboobaker Lab.) - Investigating stem cells, regeneration and ageing using Planarian flatworms• Identified telomerase isoforms by integrating NGS and RACE data: Designed and performed experiments (RACE) and sequence analyses (bash).• Characterised the role of JNK signaling in posterior regeneration of a flatworm (S. med): Performed revision experiments (RNAi, drug treatment, FISH) and co-authored paper.• Established a 3-year fellowship proposal to investigate RNA methylation in S. med: Designed, performed pilot experiments (RNAi, sequence analyses) and authored proposal.Teaching, Public Engagement and other Activities:- Oxford Stem Cell Institute Annual Symposium Delegate (2015)- International Symposium of Flatworm Biology Delegate (2015)- Big Data Science in Medicine 2014 (2014 Sep. & Dec. Symposiums) Delegate -
Postdoctoral ResearcherUniversity Of Oxford Jun 2014 - Aug 2014Oxford, United KingdomResearch (Ferguson Lab. & Breuker Lab.) - Pilot postdoctoral project with Dr Laura Ferguson.• Characterised the molecular expression of a large gene family: Performed experiments and bioinformatics (WMISH, sequence analyses) with pilot funding and supervision from Dr Laura Ferguson. -
Sandwich Course StudentNerc Sep 2008 - Jul 2009Oxford, United KingdomNERC Internship at the Centre for Ecology and Hydrology (CEH) assisting Prof. Robert D. Possee with baculovirus research.• Classified hyper variable DNA regions and discovered a novel transposon: Generated and analysed baculovirus sequencing data in a Linux environment.• Identified new conditions for induction of cytopathic effects: Performed experiments recombineering baculoviruses and transfecting insect cell lines.
Jean-Michel Carter Education Details
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Developmental Biology -
Upper Second-Class Honours (2:1)
Frequently Asked Questions about Jean-Michel Carter
What company does Jean-Michel Carter work for?
Jean-Michel Carter works for Nanyang Technological University
What is Jean-Michel Carter's role at the current company?
Jean-Michel Carter's current role is Research Fellow.
What schools did Jean-Michel Carter attend?
Jean-Michel Carter attended Oxford Brookes University, Oxford Brookes University.
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Jean-Michel Carter
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