John D. Jackson, Phd

John D. Jackson, Phd Email and Phone Number

RefSeq Genome Database Biocurator @ National Center for Biotechnology Information (NCBI)
Frederick, MD, US
John D. Jackson, Phd's Location
Frederick, Maryland, United States, United States
John D. Jackson, Phd's Contact Details

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About John D. Jackson, Phd

Molecular Biologist with 4 years of protein engineering experience designing novel therapeutic proteins for a leading synthetic biology company and 10 years of experience developing a protein bioinformatics database at the National Center for Biotechnology Information. Currently, a RefSeq Scientist at the National Center for Biotechnology Information. 13 years of ‘wet lab’ research experience in 3 different molecular biology laboratories. Co-author of 19 scientific publications (5 first-author) and co-inventor on 1 patent. Core competencies: scientific writing, Next-Gen sequence analysis, CDTree, Cn3D, CLC Workbench, Discovery Studio, MEGA, PyMOL, gene design, homology modeling, phylogenetic analysis, sequence analysis, data mining, in silico target validation.

John D. Jackson, Phd's Current Company Details
National Center for Biotechnology Information (NCBI)

National Center For Biotechnology Information (Ncbi)

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RefSeq Genome Database Biocurator
Frederick, MD, US
Employees:
176
John D. Jackson, Phd Work Experience Details
  • National Center For Biotechnology Information (Ncbi)
    Refseq Genome Database Biocurator
    National Center For Biotechnology Information (Ncbi)
    Frederick, Md, Us
  • National Center For Biotechnology Information (Ncbi)
    Refseq Genome Biocurator
    National Center For Biotechnology Information (Ncbi) Jul 2016 - Present
    Bethesda, Md
  • Fda, Center For Biologics Evaluation And Research
    Orise Research Fellow
    Fda, Center For Biologics Evaluation And Research May 2015 - Jul 2016
    White Oak, Md
  • Intrexon Corporation
    Senior Protein Engineer, Molecular Engineering Unit
    Intrexon Corporation Oct 2011 - Apr 2015
    Germantown, Md
    Member of a protein engineering team supporting Intrexon's commercial divisions (Human Therapeutics, Industrial Products, Animal Science, and Agricultural Biotech) in development and analysis of proteins for both therapeutic and non-therapeutic potential. Played a lead role in the research, design, and analysis of proteins using in silico methods. • Co-inventor on 1 patent• In silico Antibody Engineering – scFv’s, scFv-Fc’s• In silico Chimeric Antigen Receptor Engineering• Generation of cytokines with novel pharmacokinetic properties as part of CRADA with NCI. Going into clinical trials• Generation of novel inhibitor molecules to treat wet AMD. Sun Pharma-XON joint venture. Going into clinical trials• Identification of broad neutralizing protein targets on the surface of a human viral pathogen• Identification of antigenic targets on the viral Capsid protein of a common animal pathogen• Identification of putative plant drought tolerance genes using phylogenetic analysis• Technical Skills: PyMol, Discovery Studio, homology modeling, in silico target validation, data mining• Project Management Skills: Generating timelines, Producing plans & estimates, Writing project proposals & charters• Project Management Skills: Risk identification, assurance of execution of deliverables and milestones for research programshttp://www.DNA.com
  • National Center For Biotechnology Information (Ncbi)
    Conserved Domain Database Biocurator
    National Center For Biotechnology Information (Ncbi) Jul 2002 - Oct 2011
    Bethesda, Md
    Member of an interdisciplinary team of 25 scientists developing the Conserved Domain Database (CDD) for protein classification and interactive protein domain family analysis. Primary contributor of thousands of structure-based, functionally-annotated multiple sequence alignment models to the CDD. My strengths include 3D protein structure superposition, homology modeling, sequence-structure analysis, functional site annotation/prediction, phylogenetic analysis, protein superfamily classification and scientific writing. Lead Scientist: Aron Marchler-Bauer, PhD• Creation of protein structure-based, functionally-annotated multiple sequence alignment models• Classification of protein superfamilies using phylogenetic analysis • Scientific Writing: Project Reports, Scientific Posters, Abstracts• Technical Skills: Cn3D, CDTree, MMDB, phylogenetic analysis, data mining• Co-author of 6 peer-reviewed publications.
  • National Center For Biotechnology Information (Ncbi)
    Cogs Database Biocurator - Protein Classification Analyst
    National Center For Biotechnology Information (Ncbi) Jul 2001 - Jun 2002
    Bethesda, Md
    Member of an interdisciplinary team of scientists developing the Clusters of Orthologous Groups of proteins (COGs) Database, an evolutionary classification of proteins from major phylogenetic lineages. Responsibilities included assigning proteins from several whole genomes to COGs and KOGs using sequence analysis and comparative genomics. • Co-author of 3 peer-reviewed publications.
  • Johnson & Johnson
    Postdoctoral Research Fellow
    Johnson & Johnson Jun 2000 - Jun 2001
    Skillman, Nj
    Postdoctoral Research Fellow in the Skin Research Center at Johnson&Johnson Consumer Products Inc. Tested hundreds of natural products for their effect on skin pigmentation in laboratory mice, a number of which were chosen for further testing.
  • University Of Rochester
    Postdoctoral Research Fellow
    University Of Rochester Jun 1996 - May 2000
    Rochester, Ny
    Cloned the gene encoding the Saccharomyces cerevisiae histone H2A.Z, deleted the gene in various yeast strains, and examined the phenotypic effects of the deletion. • Scientific writing: peer-reviewed publications, posters, abstracts, SOPs• Technical skills: PCR, DNA cloning, electroporation, phenotypic screening of mutations• Co-author of 2 peer-reviewed publications as first-author.
  • Penn State University
    Graduate Research Assistant
    Penn State University 1990 - 1996
    University Park, Pa
    Cloned a large cis-regulatory element controlling beta-globin gene expression called the beta-LCR (Locus Control Region), and assayed for the functional role of beta-LCR subregions in transfected erythroleukemia cells. • Generation of stably transformed hematopoietic cell lines• Development of a novel soft agar assay for isolating stably expressing hematopoietic cell clones• Design and construction of a beta-globin-luciferase reporter gene expression vector• Scientific writing: peer-reviewed publications, posters, abstracts, SOPs• Technical skills: PCR, DNA cloning, electroporation, luciferase assays, expression assays• Instructor for undergraduate molecular biology laboratory classes• Co-author of 5 peer-reviewed publications (2 first-author) • Co-author of 2 book chapters (1 first-author).
  • Boston University School Of Medicine
    Research Assistant
    Boston University School Of Medicine Jun 1988 - May 1990
    Boston, Ma
    Research Assistant in the Biochemistry Department at Boston University School of Medicine. Cloned procollagen alpha-2(I) promoter elements and studied the effect of promoter methylation on procollagen alpha-2(I) gene regulation in cultured cells.• Technical skills: PCR, DNA cloning, DNA sequencing, electroporation, expression assays• Co-author of 1 peer-reviewed publication.

John D. Jackson, Phd Skills

Molecular Biology Bioinformatics Biochemistry Biotechnology Protein Chemistry Genomics Life Sciences Cell Biology Cell Sequence Analysis Genetics Protein Engineering Proteomics Cell Culture Lifesciences Qpcr Dna Phylogenetics In Vitro Laboratory Protein Expression Computational Biology Dna Sequencing Protein Purification Elisa Drug Discovery Biology Assay Development Flow Cytometry Molecular Cloning Microbiology Sequencing Tissue Culture Synthetic Biology Cancer Purification Sds Page Protein Structure High Throughput Screening Monoclonal Antibodies Immunoassays Scientific Writing

John D. Jackson, Phd Education Details

Frequently Asked Questions about John D. Jackson, Phd

What company does John D. Jackson, Phd work for?

John D. Jackson, Phd works for National Center For Biotechnology Information (Ncbi)

What is John D. Jackson, Phd's role at the current company?

John D. Jackson, Phd's current role is RefSeq Genome Database Biocurator.

What is John D. Jackson, Phd's email address?

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What is John D. Jackson, Phd's direct phone number?

John D. Jackson, Phd's direct phone number is +130140*****

What schools did John D. Jackson, Phd attend?

John D. Jackson, Phd attended Penn State University, State University Of New York At Plattsburgh, State University Of New York College At Geneseo.

What are some of John D. Jackson, Phd's interests?

John D. Jackson, Phd has interest in Photography, Children.

What skills is John D. Jackson, Phd known for?

John D. Jackson, Phd has skills like Molecular Biology, Bioinformatics, Biochemistry, Biotechnology, Protein Chemistry, Genomics, Life Sciences, Cell Biology, Cell, Sequence Analysis, Genetics, Protein Engineering.

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