Jonathan Bisson Email & Phone Number

Chicago, Il, Us

Burlingame, Ca, Us

AWS, Terraform, GitHub actions, Python, C++, Ruby, Rails,PostgreSQL, MySQL, RDKit, FastAPI, Docker, Grafana, Prometheus, ElasticSearch

Chicago, Il, Us

Currently working 50-50 for two projects:- Development of tools and databases for Evidence-based pharmacognosy. Full-stack (devops, servers, CI/CD) for the mining (NLP, DBs, ETL) of literature, ontologies, gray information, internal resources.- Leading a team of 3 post-doc and 1 grad-student for discovery of new antibiotics against Tuberculosis, Lyme and ESKAPE pathogens, scale-up and methods optimization for development of leads.--- In wet-lab: new sources of microorganisms for drug discovery (antibiotics) and development of innovative and efficient approaches for Natural Products isolation (from large-scale to micro-fractionation scale), identification and annotation. Purity and NP integrity analysis including our cyclic peptides.Department of Medicinal Chemistry and Pharmacognosy - Guido Pauli's groupInstitute for Tuberculosis Research - Scott Franzblau's groupKey personnel for the Center of Natural Product Technologies: http://cenapt.pharm.uic.edu and the U19 http://grantome.com/grant/NIH/U19-AI142735-01-7650- Developing wet-lab and computational approaches for Natural Products research.- Managing a Bruker Impact II mass spectrometer and use it mostly to analyze bacterial extracts for new potential antibiotics using molecular networking and home-made software that help us comparing hundreds of strains.In the land of computational pharmacognosy:- Development of a text-mining and data-mining pipeline used in combination with an ontology we are creating (BFO based) to help us extract and mine information from publications (abstracts and full-text) and gray information. I mostly use Python and Kotlin (for Java) as my everyday's languages, but use C and shell scripts when needed of course.I also do some network engineering things when needed: Prometheus, Grafana, custom exporters, network administration (with VLANs, private vlans, routing,…)some other keywords: Databases, Nuclear Magnetic Resonance, Microbes, Plants, Fungi, Bottlewashing and more

Chicago, Il, Us

Key personnel for the Center of Natural Product Technologies.http://cenapt.pharm.uic.eduOntology development, Resource management, Software development, Data analysis.One of my current focus is on the NAPRALERT database that I rewrote completely using Django, Ansible and other neat technologies. (http://www.napralert.org)

- Full-stack: mounting the server rack, network, security, development, deployment, ops- Ops: Ansible, Docker, KVM, Git, LDAP, Nginx, LetsEncrypt, Prometheus- Dev: Python, Django, Kotlin (JVM), Spring Boot, RDF4J, Jena, CDK- Data: PostgreSQL, MongoDB, ElasticSearch (from Solr), Apache Fuseki- Ontology alignment and design: Using BFO and, mainly, the OBO Foundry ontologies, we are creating a Pharmacognosy ontology.- Text mining, word-embedding: With Word-embedding (such as GloVE)

New York, Ny, Us

I'm doing translations of TED.com conferences from English to French. - Translation- Closed-caption syncing- Review

- Reorganizing the Proxmox VMs of our infrastructure (DHCP, LDAP/AD, MediaWiki, NGINX, and internal solutions) into simple to redeploy Ansible playbooks.- Resolving mail issues with our 3 different email outputs so we don't end up in SPAM (been from 5% of acceptance to 90% according to our last reports): DKIM, SPF, DMARC- Preparing physical migration of our servers in a nice and comfy closet instead of a warm and dusty shop

Reviewer (main reviewer for two projects) for a grant in the Department of Defense Congressionally Directed Medical Research Programshttps://cdmrp.army.mil/

Member

Working on CPC and fractionnation methods with the help of Orbitrap mass spectrometry in order to find compounds with a specific taste in white wine.

Member

Fr

President

Fr

PhD in phytochemistry of stilbenoïds.* Centrifugal Partition Chromatography (CPC) methodology and theory* Mass Spectrometry (LC-MS, ESI-IT MS, CPC-MS)* Nuclear Magnetic Resonance (1D,2D, LC-NMR)* Biological assays* Chemical compounds library development* Software development

In charge of :- courses of « Natural products in the industry »- practical courses of pharmacognosy

Webmaster, congress organization

Webmaster

Member

Grad Student in the Françoise Gueritte team (Phytochemistry). Under the supervision of Vincent Dumontet and Anne-Laure Simonin.Working on inhibitors of MKLP2 and AcHE from an international collaboration harvested plant.

Under the supervision of Jean-Marie Schmitter

They Made Me Do It, Life

Education record

Doctor Of Philosophy - Phd, Science Technology And Health - Interface Chemistry-Biology

Education record