Jonathan Karr work email
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Jonathan Karr personal email
Technologist focused on developing tools to both simplify today's science and make tomorrow's science possible, from the wet lab to data visualization, bioinformatics, and simulation. In particular, my focus is developing methods, infrastructure, and community to enable holistic integrative computational "whole-cell" models of individual cells. At the core, this involves abstracting the building blocks of scientific investigation and knowledge to make it easier to execute these building blocks, combine them into a holistic approach to investigation and holistic understanding of biology, and deliver them through simple, yet powerful and flexibility user interfaces.I have over 15 years of experience as a world leader in whole-cell modeling. Through computational biology, I have deep experience in molecular and cell biology; data, knowledge, model, and software engineering; and user interfaces and data visualization.
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Head Of Platform Product And Scientific DevelopmentDeep Origin Mar 2022 - Oct 2024South San Francisco, California, UsAccelerating R&D to untangle the complexity of life -
Assistant ProfessorIcahn School Of Medicine At Mount Sinai 2014 - Mar 2022New York, Ny, UsDeveloping computational models of health & disease. -
Research Assistant To Prof. Markus CovertStanford University Jun 2007 - 2014Stanford, Ca, UsDeveloped the first comprehensive "whole-cell" computational model. Developed a novel hybrid mathematical framework. Assembled a new molecular biology database. Designed and integrated sub-models of 28 cellular processes. Developed novel algorithms for parameter estimation. Constructed new tools for exploratory data analysis. Conducted a forward genetic screen to validate the model. Investigated the molecular determinants of M. genitalium growth and division to discover new biology. Published work in Cell and Bioinformatics. Mentored several undergraduate and graduate students. -
Research Assistant To Prof. Jim DicarloMit Feb 2006 - May 2006Cambridge, Ma, UsDeveloped novel assistive surgical technology to support visual system research in non-human primates. Developed a device that detects the 3-D localization of implanted electrodes and fiducial markers in rhesus monkeys using two pairs of x-ray sources and detectors. Integrated x-ray hardware into an existing surgical systems. Implemented hardware control and image acquisition and processing software. -
Research Assistant To Prof. Michale FeeMit Jun 2004 - Aug 2005Cambridge, Ma, UsDeveloped novel assistive surgical technology to support systems neuroscience research of learning and memory in song birds. Designed and constructed technology that guides the localization of electrode implantation in songbirds. Integrated technology into existing experimental protocols.
Jonathan Karr Skills
Jonathan Karr Education Details
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Stanford UniversityBiophysics -
Stanford UniversityMedicine
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Massachusetts Institute Of TechnologyPhysics
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Massachusetts Institute Of TechnologyBrain & Cognitive Sciences
Frequently Asked Questions about Jonathan Karr
What is Jonathan Karr's role at the current company?
Jonathan Karr's current role is Accelerating R&D to untangle the complexity of life.
What is Jonathan Karr's email address?
Jonathan Karr's email address is ka****@****ssm.edu
What schools did Jonathan Karr attend?
Jonathan Karr attended Stanford University, Stanford University, Massachusetts Institute Of Technology, Massachusetts Institute Of Technology.
What are some of Jonathan Karr's interests?
Jonathan Karr has interest in Computational Biology, Cell Physiology, Systems Biology, Education, Personalized Medicine, Animal Welfare.
What skills is Jonathan Karr known for?
Jonathan Karr has skills like Bioinformatics, Computational Biology, Molecular Biology, Systems Biology, Software Engineering, Cell Biology, Cell, Science, Neuroscience, Genomics, Scientific Visualization, Algorithms.
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