Joseph Mays Email & Phone Number

New York, United States

Greater New York City Area

Laboratory of Teresa Davoli, PhD◦ Improve and troubleshoot pipelines for NGS read processing and whole genome sequencing analysis.◦ Designed KaryoTap assay for high-sensitivity high-throughput detection of DNA copy number variants in single cells by adapting the Tapestri targeted sequencing platform.◦ Developed karyotapR software package for R to automate analysis of single-cell DNA-seq data from KaryoTap.◦ Utilized simulated data and experimental sample data to improve KaryoTap assay design and performance.◦ Troubleshooted plasmid design and read alignment to enable lentiviral barcoding for KaryoTap.◦ Created KaryoCreate technology to engineer CRISPR-mediated chromosome-specific aneuploidy in cells with a small team.◦ Implemented single-cell RNA-seq analysis pipeline on HPC cluster to evaluate the efficiency of the KaryoCreate system.◦ Constructed 3 R Shiny web apps to automate genomics-related analysis tasks for non-technical staff.◦ Consult on sequencing-based and bioinformatics projects with computational and experimental staff within our lab and with collaborating labs.◦ Explore role of aneuploidy in human placenta development using cell culture methods and publicly available omics sequencing data.◦ Mentored a PhD student and Masters student with an emphasis on computational skills and project management.

Bethesda, Md

Laboratory of Cochlear Development• Performed single-cell RNA sequencing experiments on multiple platforms to characterize cellular heterogeneity across the murine cochlea• Applied bioinformatic analyses to explore and interpret multi-dimensional sequencing data • Collaborated across institutes to share single-cell RNA sequencing experience and skills • Managed a colony of >100 transgenic mice for use in experiments • Co-mentored undergraduate interns with an emphasis on independent project management

Classics Department

Prepared and maintained presentation equipment for Prof. Ammerman’s weekly classes

Bethesda, Md

Laboratory of Cochlear DevelopmentProject: Lineage Tracing in the Developing Mammalian Cochlea• Performed experiments to determine the lineage relationships of cells in the murine cochlea• Analyzed gene expression in the cochlea using immunohistochemistry and confocal microscopy • Managed a large colony of transgenic mice for use in experiments• Completed biology coursework as part of the Colgate off-campus study program

Lineberry Natatorium

• Supervised student and community patrons during open swim hours, varsity practices, and aquatic athletic events• Maintained the pool deck and ensures the facilities are in working order• Fostered sense of community between village patrons, student patrons, and student organizations sharing the facilities

• Assisted Dr. Guarnieri in performing genetic research using molecular techniques• Characterized bacterial plasmids using restriction enzyme digests and PCR • Maintained lab computer and data sharing network for lab participants• Volunteered additional hours for maintenance and longer experiments

Cedar Knolls, Nj

• Performed amplification-based diagnostic assays to test samples for pathogens• Participated in diagnostic method comparison studies and method validations • Compiled and edited standard operating procedures for new diagnostic methods

High Crest Lake, West Milford, Nj

• Supported the Head Lifeguard in managing the beach facilities• Supervised the staff, encouraging cooperation and attentiveness• Acted as liaison to the municipal Health Department • Maintained emergency and medical supplies

Doctor Of Philosophy - Phd, Cell/Cellular And Molecular Biology

Master Of Philosophy - Mphil, Cell/Cellular And Molecular Biology

Bachelor Of Arts (Ba), Molecular Biology & Classical Studies