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As a Graduate Researcher in the vibrant domain of computational biology and machine learning at the Research Foundation of The City University of New York, my endeavor is to unravel the complexities of multi-omics data for advancing personalized medicine. Our collaborative efforts are focused on processing experimental data to illuminate disease pathways and identify novel drug targets through multi-omic data integration.With a foundation in computer science and a knack for statistical analysis, my work integrates state-of-the-art algorithm development with data interpretation, contributing to the predictive modeling of single cell classifications. This intersection of research and technology is where I aspire to make significant strides in therapeutic development.
Research Foundation Of The City University Of New York
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Graduate ResearcherResearch Foundation Of The City University Of New York Mar 2022 - PresentNew York, Ny, UsResearch Focus: Machine learning, artificial intelligence, computational biology, bioinformatics, learning, and drug discovery, with a particular emphasis on leveraging multi-omics data for personalized medicine and therapeutic development.Collaborated with biology labs to process and interpret their experimental data to predict affected gene sets and disease pathways. Used statistical methods and analysis tools for interpreting and processing single cell data for multi-class classification drug target prediction.Technical Skills:Python, MATLAB, R, C++, and SQLData analysis and custom model and algorithm developmentMachine learning frameworks and tools for computational biology, such as pandas, numpy, pytorch, TensorFlow, scanpy, scikit-learn, cloud APIsLinear algebra, statistics, calculus, differential equations, and optimization -
Freelance JournalistFreelance Feb 2021 - Aug 2023As a freelance journalist and live show producer, I co-hosted for FWB (featured on New York Times, Washington Post, New Yorker), I led two live shows that brought together top performers from diverse fields, including biological research, computer science, open-source communities, and digital media. Over two years, I co-hosted engaging discussions that delved into the thought processes, mindsets, and decision-making strategies of leading experts.One of my shows focused on state-of-the-art health research, examining personal studies on health and the societal impact of large-scale diseases like COVID-19 and its mutations. The second show spotlighted high achievers in tech, media, and entertainment, offering listeners an inside look at their innovative projects and key decisions.In addition to the live shows, I conducted weekly in-depth interviews, where I explored the challenges, breakthroughs, and unique perspectives of individuals driving change in their respective fields. This experience has honed my skills in storytelling, research, and engaging audiences with meaningful conversations.Some of my favorite guests included:- Former president of the Summit Series, CEO of FWB, and chief creative officer of Powder Mountain- Former Senior Contributing Editor of VICE and journalist, editor, and digital strategist for The New York times and The Guardian.
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Machine Learning EngineerHarvard Medical School Sep 2018 - Aug 2021Boston, Ma, UsAs a machine learning researcher, software engineer, and computational biology pipeline designer, my work in the Marks Lab at the Blavatnik Institute’s Department of Systems Biology at Harvard Medical School involved the development of cutting-edge tools for neurodegenerative disease drug development, CRISPR-Cas9 targeting, cryptobiosis inducing protein design, and computational analyses of protein structures.I contributed to computational projects creating and using machine learning models to predict protein structure and mutation effects across various biological systems, including the SARS-CoV-2 proteome and intrinsically disordered proteins. One of my focus areas involved identifying cryptobiosis-inducing sequence segments, utilizing the evolutionary history of the biological phenomenon to better understand the mechanisms, and optimizing those functions to develop new druggable sequences.I created tools to predict and analyze off-target effects of cutting-edge paired CRISPR-dCas9 systems. These tools allowed for precise identification of pairs of custom Protospacer Adjacent Motifs and prediction for potential off-target genes. I was responsible for designing the targeting system, implementing it based on the latest research, and documenting the software for use by the wider scientific community, with plans for patenting and open-source publication.Throughout my tenure, I collaborated with prestigious labs at Harvard Medical School, MIT, WEHI, and the University of Washington on projects funded by organizations like iARPA, DARPA, and the Chan Zuckerberg Initiative (CZI). These collaborations gave me the opportunity to work with diverse, interdisciplinary teams and mentors while driving impactful research forward.This experience, along with my passion for computational biology and system design, fuels my commitment to advancing biomedical research through innovative technology. -
Project Manager/Technical Program ManagerComputing Kids Llc Apr 2018 - Sep 2018Bellevue, Washington, UsTranslated the concepts and requirements of the Digital Skills For All project into specifications and workable tasks. Wrote conceptual and proposal documentation for the project.Acclimated and managed interns working on web design, breaking down tasks and descriptions for them to accurately follow specifications. -
Web DeveloperComputing Kids Llc Dec 2017 - Sep 2018Bellevue, Washington, UsWorked on the 2018 Computing for All competition website back end, using PHP and HTML in Wordpress. My main role was to create the registration pages and processing to accommodate a new year of the CFA coding competition and debug any database issues that came along with that. -
Curriculum DeveloperComputing Kids Llc Nov 2017 - Jun 2018Bellevue, Washington, UsDuring this time I joint-created an HTML course with Jion Yi, which is currently in use to teach a web development course at Computing Kids. And begun structuring and designing a new data science course. I also designed an Introduction to Data Science course, breaking down the concepts needed to successfully breakdown and complete data science projects. -
Computer Science TeacherComputing Kids Llc Sep 2017 - Nov 2017Bellevue, Washington, UsI taught three computer science courses with Computing Kids, two as a lead teacher and one as an assistant. During this I got to work with a wide variety of students simplifying and teaching computational thinking and web development. Teaching these courses brought out my desire to expand educational practices and lead me to curriculum development. -
Assistant Director/Stage ManagerAct Theatre Aug 2018 - Aug 2018Seattle, Washington, UsServed as rehearsal and producing associate for communicating between artists and production for the new work Chilifinger. Organized rehearsal spaces and consistently updated scripts for the artists, Learned about new works processing and production from professionals. -
Nextfest Production Intern5Th Avenue Theatre Assn Feb 2018 - Mar 2018Assisted in production of new musicals during the NextFest development festival. Worked closely with the festival producer to support the artists. Dealt with high-stress production difficulties like communicating between festival associates and solving scheduling constraints with math. -
Research AssistantUniversity Of Washington Mar 2016 - Jun 2017Seattle, Wa, UsDeveloped designs for mechanical 3D scanning and machine learning tools to identify food items and estimate volume. Managed various teams of 3-5 engineering students to develop new processes. Made an Android app prototype for our system. Wrote our development process and publication in the International Journal of Engineering & Technology. -
Research AssistantUniversity Of Washington College Of Engineering Jun 2015 - Sep 2015Seattle, Wa, UsCourse Material Developer | Electrical Engineering◆ Created comprehensive instructional materials for undergraduate Electrical Engineering courses, focusing on embedded systems and hardware-software integration.◆ Leveraged Linux to develop and debug code for interfacing with embedded systems, enhancing students' hands-on learning experience.◆ Documented technical research and project processes, ensuring materials were clear, scalable, and aligned with educational objectives.◆ Explored and utilized a range of computing platforms including BeagleBone Black, Raspberry Pi, and Arduino Uno, enriching course content with practical, real-world applications.
Joshua Rollins Skills
Joshua Rollins Education Details
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The Graduate Center, City University Of New YorkComputer Science -
Harvard UniversityMachine Learning And Writing -
University Of Washington College Of EngineeringElectrical Engineering (Embedded Computing Sys) -
University Of WashingtonApplied And Computational Mathematical Sciences (Discrete Mathematics And Algorithm Design) -
Bellevue CollegeAssociate Of Science Degree In Computer And Electrical Engineering
Frequently Asked Questions about Joshua Rollins
What company does Joshua Rollins work for?
Joshua Rollins works for Research Foundation Of The City University Of New York
What is Joshua Rollins's role at the current company?
Joshua Rollins's current role is Ph.D. candidate in Computer Science | Comp. Bio. | ML/AI/Deep Learning | Prof. Lei Xie's Lab - Multiomics, Systems Pharmacology, and Drug Discovery research.
What is Joshua Rollins's email address?
Joshua Rollins's email address is jo****@****ard.edu
What is Joshua Rollins's direct phone number?
Joshua Rollins's direct phone number is +142578*****
What schools did Joshua Rollins attend?
Joshua Rollins attended The Graduate Center, City University Of New York, Harvard University, University Of Washington College Of Engineering, University Of Washington, Bellevue College.
What skills is Joshua Rollins known for?
Joshua Rollins has skills like Java, C, Matlab, R, Logic Programming, Sql, Fpga Prototyping, Embedded Systems, Mathematical Modeling, C++, Verilog, Json.
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