Johannes J.

Johannes J. Email and Phone Number

PhD in Bioengineering: Data Science, Computational Molecular Biology | University of Colorado Denver Anschutz Medical School @ University of Colorado Denver
Boulder, CO
Johannes J.'s Location
Seattle, Washington, United States, United States
Johannes J.'s Contact Details

Johannes J. work email

Johannes J. personal email

About Johannes J.

With over five years of experience in computational systems biology, data science, and bioengineering, I am a doctoral candidate at University of Washington and Institute for Systems Biology, working on cutting-edge research in microbial systems ecology and big data analyses. My research focuses on studying chronic diseases and healthy aging related to the human gut microbiome and gut-kidney-axis using computational, systems, and synthetic bioengineering approaches.I started my career as a R&D engineer and project manager at PepsiCo, where I innovated on global brands like Lay's potato chips, and gained valuable skills in bioprocess development, simulation, data analytics, and consumer products manufacturing. As a co-advised PhD student in the Leroy Hood/Nathan Price and Sean Gibbons Labs, I aim to build myself as a leader within the data science and bioengineering community, and to pursue excellence in research, applied sciences, and teaching. My goal is to advance the understanding and application of computational biology for human health and wellness.

Johannes J.'s Current Company Details
University of Colorado Denver

University Of Colorado Denver

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PhD in Bioengineering: Data Science, Computational Molecular Biology | University of Colorado Denver Anschutz Medical School
Boulder, CO
Website:
colorado.edu
Employees:
5001
Johannes J. Work Experience Details
  • University Of Colorado Denver
    Instructor, Senior Research Scientist/Bioinformatician
    University Of Colorado Denver Nov 2024 - Present
    Denver, Co, Us
  • Institute For Systems Biology (Isb)
    Phd
    Institute For Systems Biology (Isb) Aug 2024 - Aug 2024
    Seattle, Washington, Us
  • Institute For Systems Biology (Isb)
    Doctoral Candidate
    Institute For Systems Biology (Isb) Apr 2023 - Aug 2024
    Seattle, Washington, Us
  • Institute For Systems Biology (Isb)
    Research Assistant
    Institute For Systems Biology (Isb) Mar 2020 - Apr 2023
    Seattle, Washington, Us
    PI: Sean Gibbons, PhD, and Leroy Hood MD, PhDPhD Supervisory Committee: Drs. Sean Gibbons, Leroy Hood, Nathan Price, Hao Yuan Kueh, Nancy Allbritton, and Julia Cui.Focus: Using data science, gut ecology modeling, and systems and synthetic biology to predict, understand, and engineer the human gut microbiome. Currently exploring a deeply-phenotyped, multi-omics data set to elucidate early pathology in chronic kidney disease (CKD).
  • University Of Washington
    Doctoral Candidate
    University Of Washington Apr 2023 - Aug 2024
    Seattle, Wa, Us
  • University Of Washington
    Research Assistant
    University Of Washington Sep 2019 - Apr 2023
    Seattle, Wa, Us
  • Institute For Protein Design, University Of Washington
    Graduate Research Assistant
    Institute For Protein Design, University Of Washington Sep 2019 - Dec 2019
    Seattle, Washington, Us
    PI: David Baker, PhD● Mentored under a post-doctoral scholar in 80+ member, fast-paced, independent lab to learn Rosetta computational framework and present successful design of a protein rotary motor ring that binds to a light-sensitive ligand in hopes of it inducing ratchet motor-like spinning.● Programmed using Bash shell, Jupyter Notebooks, Github, XML (RosettaScripts), and Python (PyRosetta) to dock azobenzene derivatives into protein scaffold.● Leveraged bicystronic expression of plasmids with target protein in E. coli; purified, and tested the feasibility and binding of the protein motor in vitro using Ni-NTMA purification, SDS PAGE, SEC, spectrophotometry, and LCMS.
  • Pepsico
    R&D Engineer
    Pepsico Sep 2018 - Aug 2019
    Purchase, New York, Us
    ● Leading global engineering projects for billion $ brands (e.g. Lay’s, Doritos, Ruffles) involving: internal/external and cross-functional (engineering, operations, R&D, marketing, supply chain) collaboration; plant trials; equipment design, testing, logistics; commissioning; experimentation; and process simulation.● Benefiting a multi-million $ brand and billion $ global expenditure as a 2014 summer intern by translating technical results into business strategy for senior leadership in a 12-week research project.● Managing weekly project progress; aligning timelines, driving progress, and assembling technical regulatory and compliance documentation (CE, HAACP, SOP, etc.) for certifying global R&D projects.● Exploring, testing, interpreting, and delivering results on breakthrough R&D technologies spanning electrical, mechanical, chemical, and controls engineering.● Rapidly learning new fields of engineering sciences to develop expertise and design new technologies.● Designing plant experiments (DOE) based on fundamentals (mass/energy balances, chemical analysis) and interpret process data using statistical analysis (post hoc analyses such as ANOVA).● Managing CFD/FEA projects that solve resource-limited problems and reporting results to a P.E.● Training engineers and managers on new R&D technologies in co-developed and hosted seminars.● Mentoring summer college interns on professional culture and delivering excellent technical results.● Selling R&D projects and results to internal departments and executive stakeholders up to Senior VP level to win funding and approval.● Cultivating daily, deep buyer-vendor relationships with partners that source technology and collaborate with global R&D partners between EU and Americas.● Leading communications for vendor contract and purchasing negotiations.● Drafting and maintaining legal documents (Purchase, Work, and Service Agreements) between parties, test plans, training materials, and drawings (PFDs, P&IDs).
  • Pepsico
    R&D Associate Engineer
    Pepsico Nov 2015 - Sep 2018
    Purchase, New York, Us
  • Texas A&M University
    Undergraduate Research Assistant
    Texas A&M University Jan 2013 - Jun 2015
    College Station, Tx, Us
    Completed research projects and studies in engineering applications under various chemical engineering professors.Dr. Katy Kao: January 2015 - June 2015● Investigated and validated methods to increase bioreactor carotenoid yield in modified yeast cells for nutraceutical applications.● Utilized spectrophotometry, micropipetting, bioreactor sampling, cell culture preparation, HPLC, media preparation, and other biological science laboratory methods.Dr. Victor Ugaz: August 2013 - May 2014● Initiated experiments for designing a portable, USB-powered DNA analysis platform using microscale fluidics during a two-semester research competition called the AggieE-Challenge.● Won Second Place in university-wide research competition.● Designed and tested electrodes, alternative reaction detection mechanisms, and fluorescent imaging techniques for the device.Dr. Sreeram Vaddiraju: January 2013 - May 2013● Researched cobalt-antimony and other nanowire combinations for their material properties and biomedical applications.● Utilized Raman spectroscopy and SEM to identify nanoparticles and compounds.
  • Pepsico
    R&D Engineering Intern
    Pepsico May 2014 - Aug 2014
    Purchase, New York, Us

Johannes J. Education Details

  • University Of Washington
    University Of Washington
    Bioengineering: Data Science
  • Texas A&M University
    Texas A&M University
    Chemical Engineering
  • Pratt Institute
    Pratt Institute
    Graphic Design

Frequently Asked Questions about Johannes J.

What company does Johannes J. work for?

Johannes J. works for University Of Colorado Denver

What is Johannes J.'s role at the current company?

Johannes J.'s current role is PhD in Bioengineering: Data Science, Computational Molecular Biology | University of Colorado Denver Anschutz Medical School.

What is Johannes J.'s email address?

Johannes J.'s email address is as****@****hoo.com

What schools did Johannes J. attend?

Johannes J. attended University Of Washington, Texas A&m University, Pratt Institute.

Who are Johannes J.'s colleagues?

Johannes J.'s colleagues are Joshua French, Elizabeth Garcia, Ellen Ford, Vadym Zaberezhnyy, Joanna (Joni) Dunlap, Tyler Keyworth, Bo Lee.

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