UWISDOM (U of Washington Informatics, Systems immunology, and Data Omics in Medicine) brings expertise in multi-omics, statistics, and machine learning to help researchers glean novel insights from their biological data. We offer assistance with experimental design, data analysis, and manuscript publication as well as training in bioinformatics.- Manage a portfolio of 10+ projects and 5+ bioinformaticians- Develop and maintain shared code base in R and python- Interface with the UW community to identify and fill bioinformatic needshttps://uwisdom.github.io/index.html

- Lead a team of bioinformaticians analyzing 'omics data across diverse research fields- Develop software (R packages) and reproducible workflows (snakemake, Rmarkdown)- Multi-omics and integrated data analyses

- Data cleaning, quality assessment, and statistical analyses of next-gen sequencing data sets including RNA-seq, WGS, ATAC-seq, methylation, and others- Support and mentor a growing team of bioinformaticians as well as post-docs and students in related groups

https://www.europadx.com/

https://seattlebiosoftware.com/

- Coordinate data science workshops for Ecosystem Services, Commercialization Platforms, and Entrepreneurship (ECOSCOPE)- Refine online content and act as primary webmasterFor more information: http://ecoscope.ubc.ca

- Direct Experiential Data Science for Undergraduate Cross-disciplinary Education (EDUCE) including a team of 3 teaching assistants- Design and implement data science curriculum in R/RStudio, command line tools, and cloud resources across 7 undergraduate courses- Promote open science and reproducible research through curriculum development and dissemination on GitHub (https://github.com/EDUCE-UBC)For more information: http://ecoscope.ubc.ca/program-structure/educe/

With Drs. Pamela Herd (Sociology) and Federico Rey (Bacteriology)- Investigated the relationship between the human gut microbiome and long-term behaviors using the Wisconsin Longitudinal Study (WLS, http://www.ssc.wisc.edu/wlsresearch/) - Applied multiple regression analyses with confounder and multiple comparison correction in R- Navigated large, longitudinal survey databases using R and Git

Microbiology Doctoral Training program (MDTP) with Dr. Garret Suen (Bacteriology)- Thesis: Assessing the impact of diet on microbial succession, growth, and milk production in dairy cows- Designed and implemented amplicon sequence analysis pipelines in mothur and R on both local and remote resources- Collaborated effectively with diverse international researchers resulting in numerous publications as first, middle, or corresponding author- Communicated research to expert and general audiences through oral, poster, and writing mediums- Mentored high school, undergraduate, and graduate students

Physiology of Microorganisms (MICRO526)- Taught guest lectures on microbial metabolism- Created summative assessment material- Completed grading and held office hours

- Completed content and copy editing of online textbooks in biology

- Completed content and copy editing of "end of chapter" questions and keys for online textbooks in general biology and chemistry as well as environmental science

- Provided in lab assistance, completed grading, and held office hours-- General Chemistry I (CHEM110)-- Integrated Chemical Principles and Analytical Chemistry (CHEM230)-- Organic Chemistry I and II (CHEM250/1)-- Unity of Life: cells, molecules, and systems (BIOL111)-- Genetics (BIOL311)

With Dr. Mark Martin at the University of Puget Sound- Investigated global regulation of maltose metabolism in Bdellovibrio bacteriovorus with particular focus on possible malA regulators.

With Dr. Mark Martin at the University of Puget Sound. - Investigated the roles of malF and malA in maltose metabolism in and the predatory lifestyle of Bdellovirbrio bacteriovorus.