Kevin Gunderson

Kevin Gunderson Email and Phone Number

Cofounder and Scientific Advisor, Encodia, Inc. @ Encodia, Inc.
Kevin Gunderson's Location
Encinitas, California, United States, United States
Kevin Gunderson's Contact Details

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About Kevin Gunderson

Highly innovative and driven scientific executive and entrepreneur with the goal of positively impacting health care through new technology development.Kevin has over 20 years of experience in developing scalable assay technologies, and has published over 50 articles in peer reviewed journals, and filed more than 30 patents and patent applications. His technical expertise spans the fields of molecular biology, nucleic acid enzymology, assay development, surface chemistry, nanopore technology, and microfabrication. While at Illumina, Kevin led the Advanced Research Group and created several scalable genomic technologies including Illumina’s first $1B dollar product line based on the Infinium assay and enabled massively-parallel array-based whole genome genotyping, DNA copy number, FFPE, and methylation analysis. His team also championed Next-Gen Sequencing, and helped create a number of scalable Next-Gen Sequencing (NGS) assays and technologies including target enrichment assays, amplicon enrichment, targeted methylation, synthetic long read technologies, single cell technologies based on combinatorially indexed nuclei sequencing, and HiSeqX patterned flow cell technology. These efforts helped Illumina grow from a fledgling start-up to the world’s leading provider of Genomics and NGS instruments and assays. Prior to Illumina, Kevin was a research scientist at Affymetrix, developing array-based hybridization by sequencing and genotyping technology. This effort was preceded by a postdoctoral research at Stanford University studying the electrophysiology of the cystic fibrosis transmembrane regulator (CFTR) ion channel. Kevin holds a PhD in biophysics and MS in physics from Stanford University, and a B.A. in math/physics from St. Olaf College. Specialties: Design of genomics assays: genotyping, methylation, expression and sequencing. Assay development and optimization. DNA arrays, hybridization, enzymology, amplification. Science project management.

Kevin Gunderson's Current Company Details
Encodia, Inc.

Encodia, Inc.

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Cofounder and Scientific Advisor, Encodia, Inc.
Kevin Gunderson Work Experience Details
  • Bluebarn Bio Llc
    President And Principal Consultant
    Bluebarn Bio Llc Sep 2021 - Present
    Providing scientific and technical consulting services to biotech companies with emphasis on tools development.
  • Encodia, Inc.
    Cofounder And Scientific Advisor, Encodia
    Encodia, Inc. Jul 2021 - Present
    San Diego, Ca, Us
  • Encodia, Inc.
    Cofounder, Vp And Cto At Encodia
    Encodia, Inc. Apr 2016 - Jul 2021
    San Diego, Ca, Us
    Encodia is enabling “Next-Gen” proteomics by creating scalable and parallelized solutions to protein analysis.
  • Illumina, Inc.
    Senior Director, Advanced Research
    Illumina, Inc. Feb 2007 - Mar 2016
    San Diego, Ca, Us
    Oversaw R&D of new genotyping and sequencing technologies and applications.Led Advanced Research team developing array-based and Next-Gen sequencing technologies. Array technologies that we developed include development of various Infinium-based product lines (genotyping, DNA copy number, methylation and FFPE analysis) generating over $1B in sales.He and his team also developed a variety of novel Next-Gen libary preparation approaches which have enabled improved targeted sequencing, long range haplotyping, and single cell analysis. For targeted enrichment, Kevin's team developed both a hybrid capture approach to DNA enrichment used in Illumina’s TruSeq and Nextera rapid capture enrichment kits, and additionally conceived and developed the TruSeq Custom amplicon assay. Kevin's team also conceived and developed several synthetic long read technologies which enable long range sequence information to be inferred from short read Next-Gen sequencing. These technologies include combinatorial indexing-based CPT-Seq and barcoded bead-based CPT-Seq (see publications). Expanding on the CPT-Seq combinatorial indexing approach, Kevin and his team initiated a collaboration with Jay Shendure’s lab to develop transposase-based single cell combinatorial indexing approaches to single cell analysis (SCI-seq). Populations of nuclei are combinatorially indexed to generate single cell nuclei libraries. Depending on how the nuclei are processed, various types of single cell libraries can be generated including sci-ATAC-seq for measuring chromatin accessibility, sci-Hi-C for measuring chromatin structure, sci-DNA-seq for measuring copy number, as well as enabling a variety other single cell indexed nuclei-based studies. Finally, Kevin’s Advanced Research team also led the initial microfabrication development of patterned flow cells, which form the core of the Illumina’s highly successful HiSeq and NovaSeq product lines.
  • Illumina, Inc.
    Principal Scientist
    Illumina, Inc. Jan 2002 - 2007
    San Diego, Ca, Us
    Kevin and his team invented and developed Illumina’s Infinium® whole genome genotyping assay enabling virtually unlimited multiplexing from a single sample preparation. Using this technology, Illumina has developed a high-density SNP genotyping platform capable of genotyping over 20 million SNPs on a single slide. His team also combined the Infinium assay with bisulfate conversion to create a genome-wide assay for CpG methylation. Moreover, he and his team developed several Infinium applications including DNA copy number, methylation and FFPE analysis. Accomplishments include release of the Infinium Methylation assay which is used in the highly successful Infinium HumanMethylation 450k BeadChip, and the InfiniumFFPE Restoration kit. Kevin and his team also played a key role in identifying NGS as an important business opportunity for Illumina prior to the Solexa acquisition.
  • Illumina, Inc.
    Associate Director
    Illumina, Inc. Jan 2000 - 2002
    San Diego, Ca, Us
    Developed BeadArray decoding and genotyping platforms.
  • Illumina, Inc.
    Senior Scientist
    Illumina, Inc. Oct 1998 - Jan 2000
    San Diego, Ca, Us
    Initial founding scientist at Illumina. Developed decoding and genotyping platforms, and received several patents for work. Conceived the idea of applying error correcting codes such as Hamming distance to improve accuracy of decoding.
  • Affymetrix
    Staff Scientist
    Affymetrix Jun 1996 - Sep 1998
    Santa Clara, California, Us
    Developed sequencing by hybridization/ligation approaches on n-mer arrays. We demonstrated the first example of sequencing by hybridization by resequencing up to 5000 base targets using arrays of all possible 9-mer DNA words.

Kevin Gunderson Skills

Molecular Biology Genomics Assay Development Nanofabrication Management Nucleic Acid Enzymology Planar Bilayers And Ion Channels Sequencing Genotyping Dna Science R&d Microfabrication Dna Sequencing Life Sciences Biotechnology Pcr Cell

Kevin Gunderson Education Details

  • Ucsd Executive Education – Uc San Diego
    Ucsd Executive Education – Uc San Diego
    Executive Perspective For Scientists & Engineers (Epse)
  • Stanford University
    Stanford University
    Biophysics
  • Stanford University
    Stanford University
    Physics
  • St. Olaf College
    St. Olaf College
    Physics And Math

Frequently Asked Questions about Kevin Gunderson

What company does Kevin Gunderson work for?

Kevin Gunderson works for Encodia, Inc.

What is Kevin Gunderson's role at the current company?

Kevin Gunderson's current role is Cofounder and Scientific Advisor, Encodia, Inc..

What is Kevin Gunderson's email address?

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What is Kevin Gunderson's direct phone number?

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What schools did Kevin Gunderson attend?

Kevin Gunderson attended Ucsd Executive Education – Uc San Diego, Stanford University, Stanford University, St. Olaf College.

What are some of Kevin Gunderson's interests?

Kevin Gunderson has interest in 科学技術.

What skills is Kevin Gunderson known for?

Kevin Gunderson has skills like Molecular Biology, Genomics, Assay Development, Nanofabrication, Management, Nucleic Acid Enzymology, Planar Bilayers And Ion Channels, Sequencing, Genotyping, Dna, Science, R&d.

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