Lucas Penny Email and Phone Number
I am currently pursuing a PhD in the Department of Medical Biophysics at the University of Toronto with Dr. Scott Bratman. I utilize next-generation sequencing data, genomics tools (using Python, R, and Bash) and pipelines (Snakemake), and machine-learning approaches to identify biomarkers useful for cancer detection. Committed to improving cancer management, I am passionate about streamlining cancer detection that is less invasive, more accessible, and cost-effective. My previous experiences include working on Canada's most extensive HIV self-testing study with REACH Nexus, holding multiple research positions in a number in wet and dry labs, and serving as Co-Managing Director for Nucleate Canada, a non-profit focused on graduate student entrepreneurship.
Nucleate Canada
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Nucleate CanadaNucleate Canada May 2023 - Present -
Research AnalystUniversity Health Network May 2022 - Sep 2023Toronto, Ontario, Canada• Leveraged data science and machine learning skills to characterize cancer gene expression with novel cell-free genomic data generated in-lab. Streamlined pipeline to reduce overall processing and analysis time.• Devised experiments to interrogate non-Hodgkin’s lymphoma cell lines genomic profiles for biomarker discovery. • Modeled analytes in cell media to evaluate potential non-invasive biomarkers used for early disease detection and treatment in the bloodstream of patients.• Supported larger study to process and analyze blood samples in non-Hodgkin’s lymphoma patients. -
Research ConsultantSt. Michael'S Hospital Mar 2020 - Sep 2023• Spearheaded the creation of the first national survey for the HIV front-line sector to examine the knowledge, usability, readiness and supports available for accessing HIV self-testing in Canada under Dr. Sean O’Rourke.• Recruited 400 people working in the front-line sector and from community organizations across Canada. • Funded through CANFAR and the Laidlaw Research Scholarship (combined award of $40 000), involved in Canada-wide implementation of HIV self-testing strategy and mobile health-based use for high-risk populations. -
Research Intern - BioinformaticsDonnelly Centre For Cellular And Biomolecular Research, University Of Toronto Jul 2021 - Aug 2022Toronto, Ontario, CanadaProject: A computational model to measure and describe the sequence specificity of human nucleosomeremodeling enzymes - Supervisor: Dr. Timothy Hughes• Predicted nucleosome remodeling enzyme occupancy computationally with Bash, Python, and R using sequence characteristics (k-mers, DNA structure from sequence, periodicity of dinucleotides) to determine nucleosome positioning.• Developed a pipeline to efficiently analyze and interpret data of 1024 sequence k-mers in the yeast genome to discover effects of remodeling enzymes on nucleosome occupancy.• Working with various ChIP-Seq datasets using Bash, Python, and R to predict how sequence characteristics (k-mers, DNA structure from sequence, periodicity of dinucleotides) potentially determine nucleosome occupancy. -
Covid-19 Research TeamSerotracker Apr 2020 - Mar 2021Toronto, Ontario, Canada• Responsible for data extractions and analysis of literature and news articles in order to understand population antibody patterns and potential SARS-CoV-2 immunity. Funded by Public Health Agency of Canada.• Closely involved in streamlining systematic review process to improve data analysis and efficiency of extractions. -
Student Research AssistantUniversity Of Toronto Jun 2018 - Dec 2019Toronto, Canada AreaSupervisor: Dr. Igor JurisicaLeveraged data science skills to contribute to development of human disease and cancer prediction database under, specifically worked to integrate large data sets to validate and update predictions.• 1st place in 2018 and 2019 in University Health Network (UHN) undergraduate research conference. -
Marketing Research & Data AnalystCority Mar 2018 - Jul 2018Toronto, Canada AreaCority (formerly Medgate) is medical software-as-a-service company that utilizes Environmental, Health, Safety and Quality (EHSQ) software solutions to advance sustainability and operational excellence within a company. -
Student ResearcherSt. Joseph'S Hospital And Medical Center Jun 2015 - Jun 2018• Developed a novel diagnostic device to detect early breast cancer using patient saliva under Dr. James Mahony & Dr. Suresh Neethirajan as the youngest research intern ever hired to work in both respective research labs.• Established an inter-university collaboration as the lead investigator to complete various aspects of the project.• 1 of 6 students chosen to represent Canada at the International Science and Engineering Fair in Los Angeles in May of 2017.• Recipient of Gold medalist Canada-Wide Science Fair, Sanofi BioGenius National Competition Top 5 , Canadian Manning Innovation Award, Canadian Society for Clinical Chemists Award. -
Research AssociateUniversity Of Guelph Sep 2015 - Jan 2017 -
Research AssistantMcmaster University 2012 - 2015Supervisor: Dr. Margaret Fahnestock• Gained strong wet-lab experience to better understand rhomboid protease 4 mRNA expression in a mouse model of Alzheimer's Disease. • Recipient of Bronze Medal at the Canada-Wide Science and Engineering Fair 2015 -
Student AdvisorOntario Ministry Of Education 2013 - 2014• One of 60 youth selected to represent over 2 million students at the Ministry of Education • Designed various programs to be implemented provincially by the Ministry of Education to improve student engagement and strengthen the student voice • Brainstormed potential curriculum changes with the Minister of Education, specifically focusing on secondary school science and business
Lucas Penny Skills
Lucas Penny Education Details
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Biomathematics, Bioinformatics, And Computational Biology -
Gpa: 3.90
Frequently Asked Questions about Lucas Penny
What company does Lucas Penny work for?
Lucas Penny works for Nucleate Canada
What is Lucas Penny's role at the current company?
Lucas Penny's current role is University of Toronto- PhD Student Cancer Genomics | Co-Managing Director of Nucleate Canada.
What schools did Lucas Penny attend?
Lucas Penny attended University Of Toronto, University Of Toronto.
What are some of Lucas Penny's interests?
Lucas Penny has interest in Science And Technology, Health.
What skills is Lucas Penny known for?
Lucas Penny has skills like Research, Leadership, Science, Health, Healthcare, Molecular Biology, Nonprofits, Community Outreach, Event Planning.
Not the Lucas Penny you were looking for?
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Luke Penny
1St Class Business Management With Enterprise And Innovation Graduate | Dedicated | Experienced | Collaborative | Seeking Graduate Positions!United Kingdom -
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Lucas Penny
Catonsville, Md
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