Areas: Genomic and Phenotypic Data Sharing

Areas: Genomic and Phenotypic Data SharingGA4GH - Beacon v2 specification and implementation

Position phased out due to limited government funding.

Areas: Cardiovascular Genomics, Healthy Aging and Rare DiseasesIn charge of multiple Translational Bioinformatics projects dealing with NGS data analysis and interpretation, such as:- Molecular Autopsy: Bioinformatics platform (ScrippsCall) for postmortem genetic testing for Sudden Death in the Young. "Molecular Autopsy for Sudden Unexpected Death" (2016) JAMA.- Idiopathic Diseases of Man (IDIOM): Bioinformatic analysis of WES/WGS/mtDNA data to discover the genetic variants… Show more Areas: Cardiovascular Genomics, Healthy Aging and Rare DiseasesIn charge of multiple Translational Bioinformatics projects dealing with NGS data analysis and interpretation, such as:- Molecular Autopsy: Bioinformatics platform (ScrippsCall) for postmortem genetic testing for Sudden Death in the Young. "Molecular Autopsy for Sudden Unexpected Death" (2016) JAMA.- Idiopathic Diseases of Man (IDIOM): Bioinformatic analysis of WES/WGS/mtDNA data to discover the genetic variants responsible for rare diseases.- The Wellderly: "Whole Genome Sequencing of a Healthy Aging Cohort" (2016) Cell. - Human Antibody repertoire comparison in the context of pediatric autoimmune disease (T1D) Show less

Area: Cardiovascular GenomicsLead developer of GendiCall, a comprehensive full-stack platform designed for the automated analysis of NGS data, facilitating the interpretation and dissemination of clinical data to healthcare professionals.GendiCall plays a crucial role in the analysis of samples from individuals at risk of Sudden Death Syndrome or those who have already experienced it. The platform was developed in close collaboration with Dr. Ramon Brugada from… Show more Area: Cardiovascular GenomicsLead developer of GendiCall, a comprehensive full-stack platform designed for the automated analysis of NGS data, facilitating the interpretation and dissemination of clinical data to healthcare professionals.GendiCall plays a crucial role in the analysis of samples from individuals at risk of Sudden Death Syndrome or those who have already experienced it. The platform was developed in close collaboration with Dr. Ramon Brugada from Gencardio.GendiCall was licensed to Ferrer InCode in Europe, Asia and South America. In USA was licensed to Selah Genomics. From 2019 is licensed to GEN InCode. Show less

Area: Computer-Aided Drug DesignLed development of a Drug Design platform for discovering small molecules targeting oncology targets in collaboration with IRB Barcelona.

Area: Computer-Aided Drug DesignProf. Ruben Abagyan's Laboratory: Structure Based Drug Discovery and Optimization & Structural Chemical Genomics (SSPPS & SDSC).I developed a range of tools to incorporate receptor flexibility in the context of small-molecule docking and protein-protein docking, including ALiBERO, SimiCon, BioSuper, GPCRDock2010, and MRC.

Area: Computer-Aided Drug DesignProf. Ruben Abagyan's Laboratory: Structure Based Drug Discovery and Optimization & Structural Chemical Genomics (Department of Molecular Biology). Short stages at Prof. Charles L Brooks III lab (1 month) and Prof. John Tainer's lab (2 months).

Area: Structural BioinformaticsI made significant contributions to the development and analysis of MoDEL, the largest repository of molecular dynamics trajectories for proteins.

Prof. Klaus Schulten's laboratory: Theoretical and Computational Biophysics Group (Beckman Institute for Advanced Science and Technology)

Prof. Charles Laughton's Laboratory: Molecular Recognition Group (Cancer Research Laboratories).