Marco Roos Email and Phone Number
Specialties: Interdisciplinary research, FAIR data principles, e-Science, rare diseases, molecular cell biology, Linked Data and ontologies (knowledge representation), computational research workflows, knowledge graphsMy research focus is on making computer science applicable to enhance biomedical research. My main research interest is currently in how knowledge representation (machine actionable data) can be used to advance translational research, particularly in the domain of rare diseases. After incorporating computer science in my MSc in molecular and cellular biology, I have worked as a multidisciplinary researcher in research groups in life science and computer science. Now, as group leader of the Biosemantics research group, founded by prof. Dr. Barend Mons (initiator of the FAIR principles), I lead the research, development and application of knowledge discovery methods for research on rare and genetic diseases. An important aspect of the research of my group is the implementation of FAIR data principles (data should be Findable, Accessible, Interoperable, and Reusable for humans and computers) as a means to create a powerful substrate and infrastructure for knowledge discovery across distributed heterogeneous data resources across the world. This is of particular relevance for rare diseases. Therefore I co-lead the rare disease community of the European life science data infrastructure ELIXIR and the 'FAIR at source' work package in the European Joint Programme Rare Diseases. I am involved in European Reference Networks for rare diseases and coordinate the 'Rare Diseases GO FAIR implementation network'. I have led the Dutch 'Personal Genetic Locker' project and am part of an international network to further the concept of personal health lockers. I am also involved in the national Health Research Infrastructure and the LUMC Data Competence Centre to help establish the LUMC as a FAIR principles-compliant institute.
Erdera
View- Website:
- erdera.org
- Employees:
- 16
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Work Package Co-Leader European Rare Disease Research Association (Erdera)ErderaLeiden, Zh, Nl -
Group Leader And Associate Professor Lumc Biosemantics GroupLeiden University Medical Center Oct 2020 - PresentLeiden, South Holland, NetherlandsI am privileged to lead the Biosemantics group. The group is co-founder of the FAIR principles for which its professor Barend Mons took the initiative. It focuses on computational knowledge discovery and enabling technologies for knowledge discovery for translational research on rare and genetic diseases. It is part of the LUMC Human Genetics department. -
Group Leader And Assistant Professor Lumc Biosemantics GroupLeiden University Medical Center 2016 - Oct 2020Leiden -
Group Leader And Senior Research Scientist Lumc Biosemantics GroupLeiden University Medical Center 2009 - 2016LeidenThe LUMC biosemantics group develops and applies knowledge discovery methods to elucidate the mechanisms governing disease. The group endorses a multidisciplinary e-Science approach, involving workflows for reproducible experiments and Linked Data and text mining to create substrates for knowledge discovery. -
Project CoordinatorNwo Data2Person Aug 2019 - Present
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Work Package Leader European Joint Programme Rare DiseasesEuropean Joint Programme Rare Diseases (Ejprd) Jan 2019 - PresentCo-lead of the work package in the infrastructure pillar of the European Joint Programme Rare Diseases, titled 'Enabling sustainable FAIRness and Federation at the record level for RD data, patientsand samples'. Responsible for research and development of practical implementation of FAIR principles at source and at record level to facilitate computational data analysis.
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Co-Lead Elixir Rare Disease User CommunityElixir Oct 2019 - PresentCo-lead of the ELIXIR rare disease user community. -
Co-Lead Work Package Rare Disease Use CaseElixir Sep 2015 - Oct 2019LeidenCo-lead together with Ivo Gut on the rare disease use case in Elixir, the pan-European infrastructure for life science data. Task leader for standards for data stewardship of rare disease data. -
Coordinator Rare Disease Global Open Fair Implementation Network (Rds Go Fair)Go Fair Initiative Dec 2018 - PresentRare Diseases Global Open FAIR implementation network is a voluntary 'GO CHANGE' network to foster and strategically oversee the adoption of FAIR principles in the rare disease community towards a critical mass of FAIR data in this domain. -
Editorial Board Member Translational Science Of Rare Diseases (Ios Press)Ios Press 2016 - Present -
Chair Rare Disease Linked Data And Ontology Task ForceMultiple Projects Nov 2013 - Mar 2019The rare disease linked data and ontology task force is a knowledge hub for linked data and ontology experts with a special interest in rare diseases and rare disease experts with special interest in interoperability. It fosters training and software development activities and supports knowledge exchange between technical experts and knowledge transfer to rare disease experts. It has members from institutes in the EU, USA and Australia and is supported by several projects such as RD-Connect, Elixir, and BBMRI. It was born out of the EU project RD-Connect that aims to connect rare disease data resources (omics sources, biobanks, registries).
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Active Member Netherlands Bioinformatics Centre (Nbic)Nbic 2007 - 2014Topics of interest: e-Science, computational workflows, life science information management, data integration, chromatin research / epigenetics -
Bioinformatician (Phd)Adaptive Information Disclosure (Aid), Institute Of Informatics, University Of Amsterdam Jan 2006 - 2009Amsterdam Area, NetherlandsCo-develop new methods for computational biology based on emerging e-science technology. -
Bioinformatician (Post-Doc And Sub-Project Leader)University Of Amsterdam, Integrative Bioinformatics Unit Aug 2003 - Dec 2006Amsterdam Area, NetherlandsInvolved in setting up the Integrative Bioinformatics Unit (IBU), and in establishing interdisciplinary research for bioinformatics based on new approaches emerging from e-science.
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Bioinformatician (Post-Doc)Human Genetics Department, Academic Medical Hospital, University Of Amsterdam Dec 2001 - Jul 2003Part of team responsible for the development of the Human Transcriptome Map, statistical methods for its analysis, especially for the discovery of 'Regions of IncreaseD Gene Expression' (RIDGEs), and correlations with other genome features (Versteeg et al, Genome Research, 2003).
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Phd Student Molecular CytologyMolecular Cytology Department, University Of Amsterdam Sep 1996 - Jul 2001Investigate the architecture and movement of chromatin (DNA+associated proteins) during the cell cycle by fluorescent (confocal) microscopy. First in eukaryotic nuclei of Indian Muntjac cells (unsuccesful), then in the bacterium Escherichia coli (thesis).
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Replacement Military ServiceRadiobiology, Academic Medical Hospital, Unitversity Of Amsterdam Oct 1995 - Oct 1996Contribute to research on discriminating female and male producing bull sperm cells. Develop image processing method to measure DNA content from images of fluorescently labelled DNA in bull sperm cells.
Marco Roos Skills
Marco Roos Education Details
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Cell/Cellular And Molecular Biology
Frequently Asked Questions about Marco Roos
What company does Marco Roos work for?
Marco Roos works for Erdera
What is Marco Roos's role at the current company?
Marco Roos's current role is Work package co-leader European Rare Disease Research Association (ERDERA).
What schools did Marco Roos attend?
Marco Roos attended University Of Amsterdam.
What are some of Marco Roos's interests?
Marco Roos has interest in Molecular Cytology, Computational Biology, Bioinformatics, Chromatin Research, Semantic Web, Linked Data, Interdisciplinary Research, Biology, E Science.
What skills is Marco Roos known for?
Marco Roos has skills like Bioinformatics, Computational Biology, Life Sciences, Cell, Dna, Science, Molecular Biology, Biomarker Discovery, Fluorescence, Genetics, Biology, Genomics.
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Marco Roos
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