Marek Cmero
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Marek Cmero Email & Phone Number

Senior Research Officer (Spatial Omics Data Analytics Hub) at WEHI (Walter and Eliza Hall Institute of Medical Research)
Location: Melbourne, Victoria, Australia 9 work roles 4 schools
1 work email found @mcri.edu.au LinkedIn matched
✓ Verified July 2026 4 data sources Profile completeness 100%

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Current company
WEHI (Walter and Eliza Hall Institute of Medical Research)
Role
Senior Research Officer (Spatial Omics Data Analytics Hub)
Location
Melbourne, Victoria, Australia
Company size
712 employees

Who is Marek Cmero? Overview

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Quick answer

Marek Cmero is listed as Senior Research Officer (Spatial Omics Data Analytics Hub) at WEHI (Walter and Eliza Hall Institute of Medical Research), a with 712 employees, based in Melbourne, Victoria, Australia. AeroLeads shows a work email signal at mcri.edu.au and a matched LinkedIn profile for Marek Cmero.

Marek Cmero previously worked as Senior Research Officer (Sequencing Bioinformatics) at Walter And Eliza Hall Institute Of Medical Research and Post Doctoral Researcher (Bioinformatics) at Peter Maccallum Cancer Centre. Marek Cmero holds Doctor Of Philosophy (Ph.D.), Bioinformatics (Joint With Dept. Of Surgery/Cis) from University Of Melbourne.

Company email context

Email format at WEHI (Walter and Eliza Hall Institute of Medical Research)

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{first}.{last}@mcri.edu.au
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Profile bio

About Marek Cmero

I am passionate about building efficient, robust and scalable data pipelines and workflows for biomedical research. I have over 11 years of experience solving bioinformatics problems with software, employing a pragmatic and collaborative approach. I have developed open-source computational and statistical tools that have been applied to cancer, genomics, transcriptomics and immunology, resulting in first/co-first author publications high-tier journals such as Nature Communications and Genome Biology.

Listed skills include Cancer Research, Computational Biology, R, Sharepoint, and 21 others.

Current workplace

Marek Cmero's current company

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WEHI (Walter and Eliza Hall Institute of Medical Research)
Wehi (Walter And Eliza Hall Institute Of Medical Research)
Senior Research Officer (Spatial Omics Data Analytics Hub)
parkville, victoria, australia
Website
wehi.edu.au
Employees
712
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9 roles

Marek Cmero work experience

A career timeline built from the work history available for this profile.

Senior Research Officer (Sequencing Bioinformatics)

Walter And Eliza Hall Institute Of Medical Research

Melbourne, Victoria, Australia

- Led redesign of 7+ custom scientific workflows from legacy to Nextflow system (Groovy, Python and SQL), resulting in improved portability and processing efficiency.- Designed custom solution (Python, Snakemake and Globus) for transferring large data sets (>1TB per run) from sequencing machines, resulting in automated and error-tolerant workflow that has successfully processed over 100 runs.- Led the design of Monday.com boards and workflows (Make, GraphQL API and Python), resulting in substantial improvement in lab’s ability to collaboratively manage projects.

Post Doctoral Researcher (Bioinformatics)

Peter Maccallum Cancer Centre

Melbourne, Australia

Developed HPC-optimised computational pipeline (Groovy, bpipe, Python) with continuous integration (Travis CI, GitHub Actions) for variant detection applied to 90+ Leukaemia and rare disease samples. Resulted in first-author publication in Genome Biology and open-source tool (>30 stars).

Nov 2019 - Jun 2021

Bioinformatics Research Officer

Murdoch Childrens Research Institute

Melbourne, Australia

Published novel statistical method in peer-reviewed F1000 journal. Implemented robust R markdown notebooks for the complex statistical analyses, achieving robust workflow that was able to be reproduced successfully by international researchers.

Sep 2017 - Nov 2019

Phd Researcher (Dept. Surgery/Schl. Computing & Information Systems)

The University Of Melbourne

Department Of Surgery/Department Of Computing & Information Systems

- Developed novel heuristic and machine learning algorithm (SVclone) using Python (numpy, pandas, PyMC) and R. Resulted in open-source tool (>30 stars) published in Nature Communications that has been cited in >40 papers.- SVclone method was applied to over 2,700 whole cancer genomes across 37 cancer types--the largest data set of its kind at the time--and formed a contribution to the international Pan-Cancer Analysis of Whole Genomes (PCAWG) project,

Mar 2014 - Sep 2017

Visiting Phd Fellow

Cancer Research Uk Cambridge Institute

Cambridge, United Kingdom

Strengthened collaborative ties on doctoral project, drawing on host lab's methodological experience.

May 2016 - Aug 2016

Research Assistant (Bioinformatics)

St. Vincent'S Institute Of Medical Research

Melbourne, Australia

Bioinformatics analysis of transcriptome data that contributed to publications in Nature Immunology and Immunology and Cell Biology.

Jan 2013 - Dec 2013

Research Assistant (Bioinformatics Software Engineer)

Nicta

Melbourne, Australia

Developed robust pipeline (Python, ruffus), for processing high throughput sequencing data of 16+ patient samples on HPCs. Downstream data was used in Nature Communications publication. The well-documented, modular codebase served as a foundation for another research group.

Aug 2012 - Dec 2013

Programmer Analyst

Clayko Group

Perth, Australia

Enhanced company CRM system (ASP and SQL), by implementing 5+ user-centric features. Utilised advanced SQL queries to optimise data retrieval and significantly reduced bug frequency.

Jan 2009 - Jan 2011
Team & coworkers

Colleagues at WEHI (Walter and Eliza Hall Institute of Medical Research)

Other employees you can reach at wehi.edu.au. View company contacts for 712 employees →

SK Serena Kane Serena Kane Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Australia View → PT Phil Tang Phil Tang Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Greater Melbourne Area, Australia View → YS Yvonne Sirinotis Yvonne Sirinotis Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Carlton, Victoria, Australia View → LW Lachlan Whitehead Lachlan Whitehead Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Melbourne, Victoria, Australia View → GK Gemma Kelly Gemma Kelly Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Greater Melbourne Area, Australia View → EC Ellen C. Ellen C. Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Melbourne, Victoria, Australia View → AA Abdulrahman Alammar Abdulrahman Alammar Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Melbourne, Victoria, Australia View → DB David Bryan David Bryan Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Parkville, Victoria, Australia View → KS Kristy Shield-Artin Kristy Shield-Artin Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Greater Melbourne Area, Australia View → IF Inga Feitsma Inga Feitsma Colleague at Wehi (Walter And Eliza Hall Institute Of Medical Research)Melbourne, Victoria, Australia View →
4 education records

Marek Cmero education

Graduate Certificate In Advanced Learning And Leadership (Gcall)

University Of Melbourne

Course in Ethical Leadership and collaborative project (Futures Project), involving marketing, promotion and research work.

FAQ

Frequently asked questions about Marek Cmero

Quick answers generated from the profile data available on this page.

What company does Marek Cmero work for?

Marek Cmero works for WEHI (Walter and Eliza Hall Institute of Medical Research).

What is Marek Cmero's role at WEHI (Walter and Eliza Hall Institute of Medical Research)?

Marek Cmero is listed as Senior Research Officer (Spatial Omics Data Analytics Hub) at WEHI (Walter and Eliza Hall Institute of Medical Research).

What is Marek Cmero's email address?

AeroLeads has found 1 work email signal at @mcri.edu.au for Marek Cmero at WEHI (Walter and Eliza Hall Institute of Medical Research).

Where is Marek Cmero based?

Marek Cmero is based in Melbourne, Victoria, Australia while working with WEHI (Walter and Eliza Hall Institute of Medical Research).

What companies has Marek Cmero worked for?

Marek Cmero has worked for Wehi (Walter And Eliza Hall Institute Of Medical Research), Walter And Eliza Hall Institute Of Medical Research, Peter Maccallum Cancer Centre, Murdoch Childrens Research Institute, and The University Of Melbourne.

Who are Marek Cmero's colleagues at WEHI (Walter and Eliza Hall Institute of Medical Research)?

Marek Cmero's colleagues at WEHI (Walter and Eliza Hall Institute of Medical Research) include Serena Kane, Phil Tang, Yvonne Sirinotis, Lachlan Whitehead, and Gemma Kelly.

How can I contact Marek Cmero?

You can use AeroLeads to view verified contact signals for Marek Cmero at WEHI (Walter and Eliza Hall Institute of Medical Research), including work email, phone, and LinkedIn data when available.

What schools did Marek Cmero attend?

Marek Cmero holds Doctor Of Philosophy (Ph.D.), Bioinformatics (Joint With Dept. Of Surgery/Cis) from University Of Melbourne.

What skills is Marek Cmero known for?

Marek Cmero is listed with skills including Cancer Research, Computational Biology, R, Sharepoint, Phylogenetics, Rna Seq, Genomics, and Life Sciences.

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