Scientific Manager
CurrentWorking from Excelra Headquarters in Hyderabad, India to have closer collaboration with colleagues
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Margriet Middel is listed as Scientific Manager at Excelra | Nextflow | AWS | Python | NGS | R at Excelra, a with 432 employees, based in The Randstad, Netherlands. AeroLeads shows a matched LinkedIn profile for Margriet Middel.
Margriet Middel previously worked as Scientific Manager at Excelra and Scientific Manager at Excelra. Margriet Middel holds Bachelor Of Science - Bsc, Bioinformatics from Hogeschool Leiden.
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Welcome to my profile and thank you for taking an interest in me! I am always looking for new challenging projects regarding bioinformatics or statistics, including code optimization in Python, data analysis in R, and creating workflows in Nextflow or Snakemake.Let's grab a coffee!
Listed skills include English, Python, Java, Microsoft Word, and 24 others.
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Hyderabad, Telangana, India
Working from Excelra Headquarters in Hyderabad, India to have closer collaboration with colleagues
Leiden, South Holland, Netherlands
This is the same role as Senior Bioinformatics Consultant below, following the acquisition of BISC Global by Excelra
Project Lead:* Online Pipeline Platform (https://op2.biscglobal.com/)* Setting project objectives* Guiding consultants working on the project* Performing risk assessments, keeping track of progress, and making sure projects follow assigned budgetsExecutive Consultant:* Implementation of unit tests of all functions for functionality. Integration tests to ensure multiple components operate with each other, including external connections like API. Automation via Bitbucket CI/CD.* Nextflow pipeline creation: Several tools for identifying, visualizing, and quantifying de novo RNA processing events were modified and optimized. These tools were automated in a pipeline. The pipeline produces sample-wise tables of detected events as well as tables providing statistics on differential usage of RNA processing events between groups of treatment and control. In addition, datawere structured to allow visualization in IGV. Trainer:* Provided trainings in the best practices in coding and collaboration. Trainings consisted of git (code versioning in Azure Repos), test-driven development, R-package development, data versioning (dvc), reproducibility using containers (docker and VSCode devcontainers), automated testing and linting (CI/CD) and project management (Azure Boards).
Voorhout, The Netherlands
Liverpool, United Kingdom
Reconstructed the signalling network between normal prostate epithelial and prostate carcinoma cells. In addition, the network inference and identified KEGG pathways provide insight on cell communication over time course between the two different cell types.
Leiden, South Holland Province, Netherlands
Other employees you can reach at excelra.com. View company contacts for 432 employees →
Naveen Kumar Mamidi
Colleague at ExcelraNalgonda, Telangana, India
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Vinoth Balasubramanian
Colleague at ExcelraCoimbatore, Tamil Nadu, India
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Pujari Naga Venkata Atchuthamba
Colleague at ExcelraWest Godavari, Andhra Pradesh, India
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Swaroop Talamanchi
Colleague at ExcelraBengaluru, Karnataka, India
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Satish Meesala
Colleague at ExcelraVijayawada, Andhra Pradesh, India
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SM
Sai Manish
Colleague at ExcelraHyderabad, Telangana, India
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DK
Deepak Kasat
Colleague at ExcelraIndia
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SR
Suraj Raj
Colleague at ExcelraKolkata, West Bengal, India
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SY
Shanthi Yannabathula
Colleague at ExcelraBhimavaram, Andhra Pradesh, India
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TA
Tahseen Abbas, Phd
Colleague at ExcelraDelhi, India
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Quick answers generated from the profile data available on this page.
Margriet Middel works for Excelra.
Margriet Middel is listed as Scientific Manager at Excelra | Nextflow | AWS | Python | NGS | R at Excelra.
Margriet Middel is based in The Randstad, Netherlands while working with Excelra.
Margriet Middel has worked for Excelra, Bisc Global, Momo Solutions, University Of Liverpool, and Van Stein & Groentjes B.V..
Margriet Middel's colleagues at Excelra include Naveen Kumar Mamidi, Vinoth Balasubramanian, Pujari Naga Venkata Atchuthamba, Swaroop Talamanchi, and Satish Meesala.
You can use AeroLeads to view verified contact signals for Margriet Middel at Excelra, including work email, phone, and LinkedIn data when available.
Margriet Middel holds Bachelor Of Science - Bsc, Bioinformatics from Hogeschool Leiden.
Margriet Middel is listed with skills including English, Python, Java, Microsoft Word, Microsoft Office, R, Science, and Molecular Biology.
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