A spinoff company, founded by Vingroup/VinBigdata

* 1KVG: 1000 Vietnamese Genomes Project* MASH: Management, Analysis, Sharing, and Harmonization of Biomedical Data* VGR: Building a comprehensive Vietnamese-specific Genome Reference* VGC: Design & Implementation of Vietnamese-specific Genetic Chip* VGP: Vietnamese Genome-based Prediction of Disease Risks* ADR: Preventing Adverse Drug Reactions using Pharmacogenomics Approach* AMR: Fighting Antimicrobial Resistance using Sequencing Data and Big Data Analytics

* 1000 Vietnamese Genomes Project (1KVG Project).* Management, Analysis, Sharing, and Harmonization of Big Biomedical Data (MASH Project).* Vietnamese Genome-based Prediction of Disease Risks (VGP Project)* Preventing Adverse Drug Reactions using Pharmacogenomics Approaches and Big Data Analytics (ADR Project).* Fighting Antimicrobial Resistance (AMR) using Sequencing Data and Big Data Analytics (AMR Project).

* 1000 Vietnamese Genomes Project.* Management, Analysis, Sharing, and Harmonization (MASH) of Big Biomedical Data.* Preventing Adverse Drug Reactions (ADR) using pharmacogenomics approaches and big data analytics.* Fighting Antimicrobial Resistance (AMR) using sequencing data and big data analytics.

• Workflows for Somatic Variant Calling, Structural Variant Detection, Variant Annotation.• Analysis and interpretation of short-read sequencing data from gene panels/WES/WGS.• Workflow analysis for large-scale biomedical data.

• Developing methods for detecting Indels from RNA-Seq data. This is achieved by leveraging the group's expertise and in collaboration with 1000 Genomes Projects group.• Analyzing effects of Indels on various cancer types using sequencing data. This is achieved in collaboration with various MD Anderson groups and TCGA working groups.• Developing methods for computational immunogenomics including HLA typing, TCR profiling, and neoantigen prediction using both sequencing and mass… Show more • Developing methods for detecting Indels from RNA-Seq data. This is achieved by leveraging the group's expertise and in collaboration with 1000 Genomes Projects group.• Analyzing effects of Indels on various cancer types using sequencing data. This is achieved in collaboration with various MD Anderson groups and TCGA working groups.• Developing methods for computational immunogenomics including HLA typing, TCR profiling, and neoantigen prediction using both sequencing and mass spectrometry data. Show less

• Developed a novel method for variant calling from sequencing data. This method leverages known genomic variants with a Bayesian framework to detect variants. - The method was implemented in Go language (github.com/namsyvo/IVC).• Developed a novel method for aligning short-reads to reference genomes. This method exploits an iterated randomized algorithm together with a bidirectional FM-index to improve alignment performance across a wide range of read lengths and base error… Show more • Developed a novel method for variant calling from sequencing data. This method leverages known genomic variants with a Bayesian framework to detect variants. - The method was implemented in Go language (github.com/namsyvo/IVC).• Developed a novel method for aligning short-reads to reference genomes. This method exploits an iterated randomized algorithm together with a bidirectional FM-index to improve alignment performance across a wide range of read lengths and base error rates. - The method was implemented in C++ (github.com/namsyvo/RandAL).• Developed a novel method for predicting true patterns of gene expression. This method uses directed graphs and orderable sets to represent gene patterns and to deduce more and better functionally enriched gene clusters than traditional methods. - The method was implemented in Python (github.com/namsyvo/mDAG). Show less

• Built web-based tools for analyzing gene expression data with using Python and web2py.• Participated in the project of designing synthetic genes with maximal number of hidden stop codons.

• Taught several subjects: Programming Languages, Object Oriented Programming, Networks Application Programming.• Designed and implemented a new method for XML Schema Integration. This project was supported in part by University of Civil Engineering under Grants KHXD 2006 – 2008.• Developed a new method for XML Schema Automatic Matching. This project was supported inpart by the Vietnam’s Ministry of Science and Technology under Grant KHCB 2.034.06.• Developed and maintained a… Show more • Taught several subjects: Programming Languages, Object Oriented Programming, Networks Application Programming.• Designed and implemented a new method for XML Schema Integration. This project was supported in part by University of Civil Engineering under Grants KHXD 2006 – 2008.• Developed a new method for XML Schema Automatic Matching. This project was supported inpart by the Vietnam’s Ministry of Science and Technology under Grant KHCB 2.034.06.• Developed and maintained a website for Department of Systems Engineering, University of Civil Engineering. Show less