Naresh Doni Jayavelu Email & Phone Number

Seattle, Wa, Us

Seattle, Wa, Us

Seattle, Wa, Us

• Bioinformatics lead for Hawkins lab and collaborators in planning, design of experiments and handling NGS data pipelines for several projects• Data processing and analytics in-charge for TOPMED project and processed $>$ 15,000 EPIC methylation array samples• Leading data processing, QC and downstream analysis for ChickenENCODE project• Worked on large quantities of big data, $>$ 100 TB of data• Collection, clean and manage data from various sources such as ENCODE, Roadmap, Blueprint consortiums, COSMIC, TCGA, GEO/SRA databases• Developed a machine learning framework (SVM models) to predict silencer elements in genome-wide manner across several human and mouse cell types• Designed a hybrid deep learning framework for more accurate prediction of silencer elements genome-wide manner• Proposed a novel framework to find combinations of patterns in the motif binding data to identify different classes of regulatory elements• Automated routine tasks of NGS data preprocessing and analyses for RNA-seq, ATAC-seq, ChIP-seq, RRBS and WGBS

Turun Yliopisto, Fi

• Led several projects as bioinformatics expert, assist investigators in planning and design of experiments• NGS data preprocessing and analyses for RNA-seq, ATAC-seq, ChIP-seq, RRBS and WGBS• Employed PCA and clustering for outliers’ detection and to find similar samples• Worked with many research groups effectively managing the data analytics needs• Wrote custom scripts to visualize complex data

Turku, Varsinais-Suomi, Fi

• Led several projects as bioinformatics expert, assist investigators in planning and design of experiments• NGS data preprocessing and analyses for RNA-seq, ATAC-seq, ChIP-seq, RRBS and WGBS• Employed PCA and clustering for outliers’ detection and to find similar samples• Worked with many research groups effectively managing the data analytics needs• Wrote custom scripts to visualize complex data

Bagneux, France, Fr

• Performed CFD analysis of complex geometries (passenger cars and trucks) to support climate control and external aerodynamics• Prepared several technical presentations, reports and communicated to clients• Involved in the projects from preprocessing to final deliveries• Won best performing team of the month on several occasionsTools used: ANSA, ICEM-CFD, Ansys-Fluent, STAR-CCM, CFD-GEOM, Visual MeshTools used: ANSA, Visual Mesh, CFD-GEOM, ICEM-CFD, Ansys Fluent, CFX and CFD Ensight

Kanpur, Up, In

Understanding cluster formations in simple and complex model systems • Development of virial equations of state and estimation of PVT data• Prediction of cluster distributions (monomer, dimer, trimer fractions etc.) in different fluid systems at super critical and saturated conditions.• Understanding the effects of temperature and density on cluster formations.Tools used: MATLAB, Mathematica, Materials Studio, Origin

Doctor Of Philosophy (Phd), Bioinformatics And Computational Biology

Master Of Technology, Chemical Engineering

Bachelor Of Technology, Chemical Engineering