Implementing real time 3d imaging algorithms in CUDA/C++

I am a member of the Medical Imaging team, Epione, and of the ERC project G-statistics. As such, I am working on computational tools for statistics on manifolds, and applications to shape analysis.I am also involved in the development of geomstats, a python package for geometry and machine learning --> More info on github or at geomstats.aiFor a list of publications see my scholar profile. All full texts are available on hal.

Designing methods to integrate gene-gene interaction graphs in models of imaging-genetic data to study Neurological disorders.This work was presented at ISBI 2019 in Venice, see presentation below and online paper at https://hal-cea.archives-ouvertes.fr/cea-02016625

As part of the R&D Platform Technology and Science entity, my position involves two main projects.Automation of tissue-section segmentation from optical images: delivered an end-to-end solution to automatically segment region of interest on histopathology slices:• Gathered, curated and labelled a training dataset• Automated the extraction of tissue from background (with OpenCV)• Trained an object detection deep learning architecture to remove specific regions of tissues (in… Show more As part of the R&D Platform Technology and Science entity, my position involves two main projects.Automation of tissue-section segmentation from optical images: delivered an end-to-end solution to automatically segment region of interest on histopathology slices:• Gathered, curated and labelled a training dataset• Automated the extraction of tissue from background (with OpenCV)• Trained an object detection deep learning architecture to remove specific regions of tissues (in Keras)• Deployed the model for daily useExploratory Data Analysis for computational toxicology:• Used Python and relevant data analysis packages (Pandas, Numpy, Scikit-Learn, Keras)• Learnt to convince non-mathematicians with data-driven results for decision making• Explored complex datasets with unsupervised learning methods, combining data from multiple sources and types• Delivered proof-of-concept and internal tutorials Show less