Pankaj Pradeep

Pankaj Pradeep Email and Phone Number

Bioinformatics at Mayo Clinic | Data Science in Targeted Therapeutics | ML in Biology | Columbia University MS @ Mayo Clinic
rochester, minnesota, united states
Pankaj Pradeep's Location
Rochester, Minnesota, United States, United States
About Pankaj Pradeep

Hello,It's great to see you here! I'm Pankaj Pradeep, I'm a recent Master's graduate in Biomedical Engineering at Columbia University in the City of New York, where I have been pursuing research to hone my Bioinformatics skills to contribute to research pipelines. During my time at Columbia, I have been working with varying types of biological data to derive insights using Machine Learning and Computational Biology techniques. I am passionate about contributing to groundbreaking research in the field of cancer therapeutics and bioinformatics. Through my coursework and research experiences at Columbia, I gained expertise in computational biology, oncology research, and hands-on skills for handling diverse genomics data, including single-cell data and different omics data, to better prepare myself to support the development of therapies for cancer and other life-threatening diseases.At my Undergraduate at VIT, I engaged in Molecular Biology, DNA and RNA extraction, Protein Engineering, and Design, Cell and Microbiology Cultures, and upskilled myself to make a significant contribution to the industry. I also participated in clubs and societies such as Alpha Bio Cell and SABEST which gave me the platform to explore my management and leadership skills along with learning from industry experts through the workshops and events I organized.During my free time, I engage in sports activities like soccer, table tennis, and tennis. I also enthusiastically read about upcoming trends in the Biomedical, Biotechnology, and Automobile Industries.

Pankaj Pradeep's Current Company Details
Mayo Clinic

Mayo Clinic

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Bioinformatics at Mayo Clinic | Data Science in Targeted Therapeutics | ML in Biology | Columbia University MS
rochester, minnesota, united states
Website:
mayoclinic.org
Employees:
33134
Pankaj Pradeep Work Experience Details
  • Mayo Clinic
    Associate Data Analyst - Hematology Research
    Mayo Clinic Oct 2024 - Present
    Rochester, Minnesota, United States
  • Columbia University Irving Medical Center
    Graduate Student Researcher
    Columbia University Irving Medical Center Sep 2023 - Dec 2023
    New York, New York, United States
    • Performed quality control analysis of 2500 FASTQ files, leveraging fq2vcf for Bioinformatics Analysis to convert samples to VCF for further investigation of Alzheimer’s Disease in underrepresented populations• Designed an R package to evaluate 4 AD risk factors to visualize local ancestry distinguished by 3 major ancestry groups• Co-ordinated with post-docs to troubleshoot errors in pipeline set-up and multi-tasking jobs (qsub, Unix) on HPC cluster• Conducted deconvolution of… Show more • Performed quality control analysis of 2500 FASTQ files, leveraging fq2vcf for Bioinformatics Analysis to convert samples to VCF for further investigation of Alzheimer’s Disease in underrepresented populations• Designed an R package to evaluate 4 AD risk factors to visualize local ancestry distinguished by 3 major ancestry groups• Co-ordinated with post-docs to troubleshoot errors in pipeline set-up and multi-tasking jobs (qsub, Unix) on HPC cluster• Conducted deconvolution of RNAseq data to single cell compositions to determine biomarkers using CIBERSORTx Show less
  • Gsk
    Computational Biology Oncology Intern
    Gsk Jun 2023 - Aug 2023
    Collegeville, Pennsylvania, United States
    • Investigating clinical signatures for cancer gene/protein expression from public databases• Exploring correlation patterns between RNA expression and proteomics in cancer cell lines• Visualized correlation distributions and compared them using Earth Mover’s Distance• Ingesting and pre-processing scRNA cancer datasets into Bioinformatics pipelines
  • Columbia University
    Student Researcher
    Columbia University Oct 2022 - Jun 2023
    New York, United States
    Herbert and Florence Irving Institute for Cancer Dynamics at Columbia University under Professor Karol Nowicki-Osuch• Conducting Genomic Data Analysis to identify role of extrachromosomal DNA in the evolution of cancer, using UNIX, Linux and RStudio tools.• Handled setting up CNVKit and AmpliconArchitect for analyzing BAM and VCF files for gene data• Collaborating with Professor Karol Osuch-Nowicki and a student to ensure smooth workflow
  • Technoculture Research Pvt. Ltd.
    Biotech Research Intern
    Technoculture Research Pvt. Ltd. Sep 2021 - Jun 2022
    • Conducted Research for a Point-of-Care based device to detect DNA related disorders• Proposed Ideas to use different fluorophores for detection of DNA/PCR amplicons • Initiated exploring Electrochemical Methods for DNA detection for higher accuracy • Compared different Molecular beacons for detection of DNA based target • Assisted in device set-up for detection of nucleic acids alongside 10 team members
  • Organismic Technologies
    Scientific Research Intern
    Organismic Technologies Jul 2021 - Sep 2021
    Bangalore Urban, Karnataka, India
    • Produced somatic clones of Turmeric and Ginger variants through direct organogenesis • Led greenhouse operations for producing 250 germinates of the plant species• Performed Plant Tissue Culture to obtain over 300 somatic clones of variants• Managed lab equipment for Plant Tissue Culture in Laminar Air Flow, Media Preparations, and conducted Literature Reviews to verify experiment conducted
  • Research Bulb
    Research Intern (Pharmacology)
    Research Bulb Jul 2021 - Sep 2021
    India
    • Collected papers from four different databases, Google Scholar, SAGE, DOAJ, PubMed• Arranged papers from oldest to newest based on year of publication • Collaborated with 6 members and a Scientist to develop a Review Article • Drafted parts of the Abstract and Discussions in the Published Paper along with Mentor
  • Muskurahat Foundation
    Fundraiser
    Muskurahat Foundation Mar 2021 - Apr 2021
    Mumbai, Maharashtra, India
    Used crowdfunding skills to raise funds to support projects to help the underprivileged kids to receive education.
  • Ioncure Tech Pvt. Ltd.
    Data Research Analyst And Research Intern
    Ioncure Tech Pvt. Ltd. Jun 2020 - Nov 2020
    • Executed a study on Beef Consumption in Rhode Island based on Food and Supply Chain• Gathered information using Web-scrape tools regarding beef consumption, production, import and sales in Rhode Island from U.S Food and Drug Administration• Employed Data Sciences Tools and Techniques to analyze data scraped from the web • Prepared a Research Article (as the Sole Author) with Time-step analysis and data science
  • Biolim Centre For Science & Technology
    Research Associate Trainee Intern
    Biolim Centre For Science & Technology Jul 2020 - Aug 2020
  • Alpha Bio Cell
    Core Committee Member
    Alpha Bio Cell Jul 2019 - Mar 2020
    Vellore, Tamil Nadu, India
    - Worked extensively in a Bio-Entrepreneurship driven Club. - Organised Events related to Biotechnology and Entrepreneurial options- Conducted Weekly Webinars on various Biological Fields and also inter-disciplinary topics like Bio-Machine Learning
  • Sabest (Students' Association Of Bioengineering Science & Technology)
    Core Committee Member
    Sabest (Students' Association Of Bioengineering Science & Technology) Mar 2019 - Mar 2020
    Vellore, Tamil Nadu, India
    - A club in the Co-Curricals of VIT University Vellore focusing on the Trends of Biotechnology.- Organized events related to Biotechnology field and its developments and was a part of club's activties, incluidng the bi-monthly release of the Magazine owned, written and edited by the members.

Pankaj Pradeep Education Details

Frequently Asked Questions about Pankaj Pradeep

What company does Pankaj Pradeep work for?

Pankaj Pradeep works for Mayo Clinic

What is Pankaj Pradeep's role at the current company?

Pankaj Pradeep's current role is Bioinformatics at Mayo Clinic | Data Science in Targeted Therapeutics | ML in Biology | Columbia University MS.

What schools did Pankaj Pradeep attend?

Pankaj Pradeep attended Columbia Engineering, Vellore Institute Of Technology, Cmr National Pu College, Clarence High School Bangalore.

Who are Pankaj Pradeep's colleagues?

Pankaj Pradeep's colleagues are Halley Wise, Trista Biffert, Beverly Knight, Millie Boyd, Alexandra Colavita, Kelli Black, Sherry Brandt.

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