Pankaj Pradeep Email and Phone Number
Hello,It's great to see you here! I'm Pankaj Pradeep, I'm a recent Master's graduate in Biomedical Engineering at Columbia University in the City of New York, where I have been pursuing research to hone my Bioinformatics skills to contribute to research pipelines. During my time at Columbia, I have been working with varying types of biological data to derive insights using Machine Learning and Computational Biology techniques. I am passionate about contributing to groundbreaking research in the field of cancer therapeutics and bioinformatics. Through my coursework and research experiences at Columbia, I gained expertise in computational biology, oncology research, and hands-on skills for handling diverse genomics data, including single-cell data and different omics data, to better prepare myself to support the development of therapies for cancer and other life-threatening diseases.At my Undergraduate at VIT, I engaged in Molecular Biology, DNA and RNA extraction, Protein Engineering, and Design, Cell and Microbiology Cultures, and upskilled myself to make a significant contribution to the industry. I also participated in clubs and societies such as Alpha Bio Cell and SABEST which gave me the platform to explore my management and leadership skills along with learning from industry experts through the workshops and events I organized.During my free time, I engage in sports activities like soccer, table tennis, and tennis. I also enthusiastically read about upcoming trends in the Biomedical, Biotechnology, and Automobile Industries.
Mayo Clinic
View- Website:
- mayoclinic.org
- Employees:
- 33134
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Associate Data Analyst - Hematology ResearchMayo Clinic Oct 2024 - PresentRochester, Minnesota, United States -
Graduate Student ResearcherColumbia University Irving Medical Center Sep 2023 - Dec 2023New York, New York, United States• Performed quality control analysis of 2500 FASTQ files, leveraging fq2vcf for Bioinformatics Analysis to convert samples to VCF for further investigation of Alzheimer’s Disease in underrepresented populations• Designed an R package to evaluate 4 AD risk factors to visualize local ancestry distinguished by 3 major ancestry groups• Co-ordinated with post-docs to troubleshoot errors in pipeline set-up and multi-tasking jobs (qsub, Unix) on HPC cluster• Conducted deconvolution of… Show more • Performed quality control analysis of 2500 FASTQ files, leveraging fq2vcf for Bioinformatics Analysis to convert samples to VCF for further investigation of Alzheimer’s Disease in underrepresented populations• Designed an R package to evaluate 4 AD risk factors to visualize local ancestry distinguished by 3 major ancestry groups• Co-ordinated with post-docs to troubleshoot errors in pipeline set-up and multi-tasking jobs (qsub, Unix) on HPC cluster• Conducted deconvolution of RNAseq data to single cell compositions to determine biomarkers using CIBERSORTx Show less -
Computational Biology Oncology InternGsk Jun 2023 - Aug 2023Collegeville, Pennsylvania, United States• Investigating clinical signatures for cancer gene/protein expression from public databases• Exploring correlation patterns between RNA expression and proteomics in cancer cell lines• Visualized correlation distributions and compared them using Earth Mover’s Distance• Ingesting and pre-processing scRNA cancer datasets into Bioinformatics pipelines -
Student ResearcherColumbia University Oct 2022 - Jun 2023New York, United StatesHerbert and Florence Irving Institute for Cancer Dynamics at Columbia University under Professor Karol Nowicki-Osuch• Conducting Genomic Data Analysis to identify role of extrachromosomal DNA in the evolution of cancer, using UNIX, Linux and RStudio tools.• Handled setting up CNVKit and AmpliconArchitect for analyzing BAM and VCF files for gene data• Collaborating with Professor Karol Osuch-Nowicki and a student to ensure smooth workflow -
Biotech Research InternTechnoculture Research Pvt. Ltd. Sep 2021 - Jun 2022• Conducted Research for a Point-of-Care based device to detect DNA related disorders• Proposed Ideas to use different fluorophores for detection of DNA/PCR amplicons • Initiated exploring Electrochemical Methods for DNA detection for higher accuracy • Compared different Molecular beacons for detection of DNA based target • Assisted in device set-up for detection of nucleic acids alongside 10 team members -
Scientific Research InternOrganismic Technologies Jul 2021 - Sep 2021Bangalore Urban, Karnataka, India• Produced somatic clones of Turmeric and Ginger variants through direct organogenesis • Led greenhouse operations for producing 250 germinates of the plant species• Performed Plant Tissue Culture to obtain over 300 somatic clones of variants• Managed lab equipment for Plant Tissue Culture in Laminar Air Flow, Media Preparations, and conducted Literature Reviews to verify experiment conducted
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Research Intern (Pharmacology)Research Bulb Jul 2021 - Sep 2021India• Collected papers from four different databases, Google Scholar, SAGE, DOAJ, PubMed• Arranged papers from oldest to newest based on year of publication • Collaborated with 6 members and a Scientist to develop a Review Article • Drafted parts of the Abstract and Discussions in the Published Paper along with Mentor -
FundraiserMuskurahat Foundation Mar 2021 - Apr 2021Mumbai, Maharashtra, IndiaUsed crowdfunding skills to raise funds to support projects to help the underprivileged kids to receive education. -
Data Research Analyst And Research InternIoncure Tech Pvt. Ltd. Jun 2020 - Nov 2020• Executed a study on Beef Consumption in Rhode Island based on Food and Supply Chain• Gathered information using Web-scrape tools regarding beef consumption, production, import and sales in Rhode Island from U.S Food and Drug Administration• Employed Data Sciences Tools and Techniques to analyze data scraped from the web • Prepared a Research Article (as the Sole Author) with Time-step analysis and data science -
Research Associate Trainee InternBiolim Centre For Science & Technology Jul 2020 - Aug 2020 -
Core Committee MemberAlpha Bio Cell Jul 2019 - Mar 2020Vellore, Tamil Nadu, India- Worked extensively in a Bio-Entrepreneurship driven Club. - Organised Events related to Biotechnology and Entrepreneurial options- Conducted Weekly Webinars on various Biological Fields and also inter-disciplinary topics like Bio-Machine Learning
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Core Committee MemberSabest (Students' Association Of Bioengineering Science & Technology) Mar 2019 - Mar 2020Vellore, Tamil Nadu, India- A club in the Co-Curricals of VIT University Vellore focusing on the Trends of Biotechnology.- Organized events related to Biotechnology field and its developments and was a part of club's activties, incluidng the bi-monthly release of the Magazine owned, written and edited by the members.
Pankaj Pradeep Education Details
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Biomedical Engineering, Bioinformatics -
Biotechnology -
Cmr National Pu College91% -
Clarence High School Bangalore94%
Frequently Asked Questions about Pankaj Pradeep
What company does Pankaj Pradeep work for?
Pankaj Pradeep works for Mayo Clinic
What is Pankaj Pradeep's role at the current company?
Pankaj Pradeep's current role is Bioinformatics at Mayo Clinic | Data Science in Targeted Therapeutics | ML in Biology | Columbia University MS.
What schools did Pankaj Pradeep attend?
Pankaj Pradeep attended Columbia Engineering, Vellore Institute Of Technology, Cmr National Pu College, Clarence High School Bangalore.
Who are Pankaj Pradeep's colleagues?
Pankaj Pradeep's colleagues are Halley Wise, Trista Biffert, Beverly Knight, Millie Boyd, Alexandra Colavita, Kelli Black, Sherry Brandt.
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Strategic Hr Leader | Chro | Chief Ethics Officer | Driving Organizational Excellence | Transformative Hr & Compliance Initiatives | Board Engagement | Diversity & Inclusion AdvocateGurugram -
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PANKAJ YADAV Pradeep
Delhi, India
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