Phuc Pham Email & Phone Number

Kannapolis, NC

• Designed, programmed, and customized the Automated Data Analysis Pipeline (Java, database)
• Designed, implemented, and maintained the front-end and back-end of web-based XlinkIdentifier
• Made the GUI for parameter specification (drupal, php)
• Setup the automated analysis system (cron job, shell script, python)
• Help with data visualization (html)
• Revised the C code to access the NIST library

Kannapolis, North Carolina Area

• Customized and enhanced the website http://www.vaccinium.org/ for loading the new blueberry assembly
• Utilized BLAST, Apollo Genome Annotation Tool, and Genenious software to analyze gene prediction and annotation
• Utilized MISA, Primer3, and Geneious software for SSR identification and primer design
• Developed python script to recover primers from the old assemblies to the new blueberry assembly

Kannapolis, North Carolina Area

• Processed, analyzed, and presented data from RNA-Seq experiments and shotgun transcriptome sequencing from pollen.
• Wrote python and R script to calculate gene expression of pollen and seedlings
• Ran R packages (DEGSeq, DESeq, GOProfile, and BEDTools) to validate gene expression result, identify GO terms, and potential gene regions.
• Setup and designed mySQL database to store gene information and experimental result.
• Setup Drupal content management system website and wrote php script to access experimental results of pollen RNA-Seq in mySQL database and presented data on the Pollen Network www.pollennetwork.org

Charlotte, North Carolina Area

• Developed web application and database for GLECLUBS project http://gleclubs.uncc.edu/pbs
• Setup client/server NIS Linux network for Bioinformatics lab
• Setup user accounts, did backup data on the MAC O.S bio-grid cluster and IBM cluster, Linux servers
• Installed bioinformatics applications on the clusters and supported new users
• Configured web server Plone, Drupal, and database postgreSQL, mySQL for faculty, bioinformatics and genomics department website and research groups

Charlotte, North Carolina Area

• Developed, implemented, and supported medical technology products and services to help practices improve in storing patients’ records and billing utilizing Visual Basic, and SQL server.
• Enhanced the Imagine Billing System with○ Parsing patients’ medical record files into the Imagine system.○ Sending claims to insurance companies using EDI (electronic data interchanges) feature.○ Posting payment.
• Reviewed, inspected, debugged and tested team member’s codes (Visual Basic, and SQL stored procedures) and the Imagine Billing System’s functions.
• Improved the Imagine system performance and delivery by building libraries and SQL stored procedures from the old version of Imagine system.
• Backup, restored, imported/exported clients’ database for debugging and supporting customer team members.

Cary, North Carolina Area

• Familiar with the test tools such as MGTS (Message Generator Traffic Simulator), defect tracking system, automation test tools, etc
• Based on requirements and design, developed system test cases for wireless and wire-line telephony applications.
• Executed functional test, debugged software, and provided documentation of the implementation procedures of products.
• Validated web GUI (J2EE) and database (Oracle), setting up client/server network for lab.
• Worked closely with system engineers and developers for reviewing the system requirements and designs. Supported developers performing unit tests.
• Wrote Shell scripts, C, SQL stored procedures to setup lab, create data files, and worked with design team to build automation tools for testing applications.

Raleigh-Durham, North Carolina Area

• Provided information technology consultant services for associated client companies.
• Developed test cases and performed test for Lucent Technologies Wireless Intelligent Network Application.
• Achieved certificate of successful completion of the Cotelligent Training Program in Telephony, C and Shell Programming, the Unix Operating System, and Software Development Processes.

Master'S Degree, Bioinformatics And Genomics, 3.57

Java And Web Technologies, Computer Science, 4

Bachelor'S Degree, Computer Science, 3.81