Ray Marin-Florez Email & Phone Number

Rolle, Vaud, Switzerland

- Lead the pipeline development team in designing a new pipeline architecture system to better support the 100s of existing genomics/transcriptomics applications behind SOPHiA DDM- Lead the pipeline development team in adapting the existing pipeline architecture to support new types of biomarkers, sample sources or applications (e.g., liquid biopsies, whole genome) - Responsible in the Data Science department for coordinating the review, testing, integration and release of new bioinformatic pipelines into SOPHiA DDM- Responsible for the execution of intra-department and inter-deparment roadmap programs related to pipeline architecture, documentation and release- Oversee the integration of new or improved components in the pipeline architecture to guarantee non-regression in analytical or technical performance- Lead the data science department in establishing standard operating procedures and working instructions for bioinformatic pipeline development - Work in close collaboration with QA/RA departments to ensure the appropriate implementation of design controls in the development of our products

St-Sulpice, Switzerland

- Lead the pipeline development team in releasing commercial products for the detection of genomic alterations in the oncology, hereditary cancer, paediatrics and pharmacogenomics domains- Lead the pipeline development team in guaranteeing the analytical performance in variant and fusion detection for the 5 core CE-IVD pipelines in the portafolio of the company - Lead/guide senior members of the pipeline development team in their roles as technical product managers (TPM) or directly act as TPM for selected products/projects- Lead the data science department in establishing standard operating procedures and working instructions for bioinformatic pipeline development - Work in close collaboration with QA/RA departments to ensure the appropriate implementation of design controls in the development of our products

St-Sulpice

- Assemble a team able to continuously develop bioinformatic pipelines for the detection of genomic alterations in the oncology, hereditary cancer and paediatrics domains- Act as main point of contact from the Data Science department to collaborate with the engineering teams in building pipeline architectures that ensure high analytical and technical performance- Lead the Data Science department in establishing standard operating procedures and working instructions for bioinformatic pipeline development- Work in close collaboration with the commercial department to build efficient processes to collect user needs and prioritise product development- Work in close collaboration with the wet lab to design the experiments and data analysis during product development - Work in close collaboration with the project management office to ensure timely delivery of the products

St-Sulpice

- Develop bioinformatic pipelines for the detection of short variants in somatic samples using Illumina and IonTorrent data- Perform data analysis in the context of research projects and feasibility of pipeline prototypes- Contribute to the experimental design in the context of research projects and feasibility of pipeline prototypes- Perform and communicate standard data analysis to clients in the context of setup programs and collaborations

Functional Evolutionary Genomics, Lausanne

- Study the evolution of sex chromosome systems across vertebrates through the analysis of bulk RNA-seq data from multiple reference species and organs- Annotation of lncRNAs in mammals through the analysis of bulk RNA-seq data from multiple reference species, organs and developmental stages

- Develop various microRNA target prediction methods that exploited the mRNA binding site accessibility and evolutionary sequence conservation - Collaborate with molecular biologists in discovering targets of specific microRNAs involved in Erythropoiesis in mice

Group Of Theoretical Chemistry

- Develop a method characterize the molecular electrostatic potential (MEP) around the RNA double helices present in tRNA to evaluate its possible correlation with the efficiency of structural recognition and binding by the amino-acylation enzymes- Develop a molecular similarity metric based on a graph-theoretical model to characterize the molecular electrostatic potential (MEP) of small molecules

Doctor Of Philosophy (Phd), Bioinformatics

Master Of Science (Ms), Theoretical Chemistry

Bachelor Of Science (Bs), Chemistry