Deep Learning and Genetics

First Bioinformatics Scientist and Software/Machine Learning Engineer of the company.Machine Learning (Scikit-Learn) / Deep Learning (Tensorflow)Gut Microbiome / Meta-transcriptomics, ServerLess Pipeline: AWS/Lambda/Python/PostgreSqlHuman Blood Transcriptome (Rna-Seq), ServerLess Pipeline: AWS/Lambda/Python/PostgreSqlBuild website with AWS/React/Redux/Scala/Play/PostgreSql

Only Bioinformatics Scientist/Machine Learning Engineer for one year and got to develop/touch all the pieces!Machine Learning (Scikit-Learn) / Deep Learning (Tensorflow)Cancer Diagnostics and Progression - cfDNA - Digital SequencingNGS Pipeline, Algorithm Development - Big Data Processing - Machine LearningDesign of Database Annotations, Clinical Interpretation and Scoring toolsDevelopment of Variant Calling Algorithms (SNP, Indel, CNV, Structural Variants, Fusion Genes)

- Big Data Processing / Clustering / Machine Learning- Develop Variant Callers Algorithms for SNP Indels, CNV, Structural Variants, Fusion Genes...- Lead design and creation of knomePool.- auto sufficient NGS Web tool for Align, Variant Calling, Annotation, Filtering, Hypothesis Generation, Comparative and Statistical Analysis, Reporting, Sharing and Networking of Variants, Annotations, Genomes, Analysis and Findings.- knomeBase/knomeDiscovery Services.- first Knome in house tools made of a upstream cloud pipeline, knomeVariants, knomePathways, Genome Interpretation Kit for custom analytics and scientific discovery.-knomeClinic.- Variant workbench and developed a fully featured clinical genetics reporting framework based on ACMG guidelines for a locally installed hardware and software solution geared towards clinical laboratories and hospitals-Design and development of the kGAP upstream pipeline-Design and development of the cancer pipeline-Design and development of the Genome Interpretation Kit (interpretation pipeline)-Design and development of annotation engine base on public, private, and own annotation databasesUpstream and Downstream genetic analysis and interpretation of Next Generation Sequencing DNA and RNA-Seq for academic research, pharmaceutical, personalized medicine and clinical diagnosticsCancer Sequencing Analysis of tumor/normal data setsAneuploidy, LOH, Germline and Somatic mutationsMass comparison of thousands of genomes

- Lead and architect data warehouse design and business intelligence reporting- Design and development of the worlds most concurrent online ticketing application- Architect and development of Beijing Olympics 2008Software Engineer: Java, J2EE, JBoss Perl Programming (Pipelines, ETL Development, Reporting, Web Development) JavaScript, HTML, CSS, Ajax, XMLDBA: Oracle - Streams, SQL, PLSQL, Triggers, Stored Procedures, Backup and Recovery, Monitoring, Performance Tuning MySQL/PostgreSQL - SQL, Triggers, Stored Procedures, SQL Tuning, Backup and Recovery, MonitoringUnix Admin Shell Programming, Monitoring, Installing Packages and Software, Storage Administration