• Completed genomic DNA sequence variant analysis using fastp, bwa, GATK, octopus, samtools, bcftools, SnpEff, shinyGO on Illumina short-read whole genome sequence (WGS) data from different CHO cell lines on an AWS EC2 Linux instance to measure genetic differences between the cell lines. • Completed genomic DNA sequence variant analysis using fastp, pbmm2, GATK, pbsv on Pacific Biosciences (PacBio) HiFi long-read whole genome sequence (WGS) data from different CHO cell lines on an AWS EC2 Linux instance to measure genetic differences between the cell lines. • Completed differential expression analysis using a nextflow nfcore rnaseq pipeline (FastQC, STAR, stringtie, salmon), DESeq2, pathfindR on bulk RNAseq data (Illumina) from different CHO cell lines on an AWS EC2 Linux instance to measure mRNA expression differences between the cell lines.• Completed ATACseq analysis of CHO cells using a nextflow nfcore atacseq pipeline, HMMRATAC on an AWS EC2 Linux instance. • Completed Oxford Nanopore long-read structural variant calling using pycoQC, minimap2, NGMLR, SVIM, sniffles, cuteSV on an AWS EC2 Linux instance. • Collaborated with team members to develop an automated variant calling pipeline using fastp, bwa, GATK, octopus, lofreq, samtools, bcftools, SnpEff, that runs on AWS EC2 Linux instances, for protein quality control.• Collaborated with cross-functional team members to develop machine learning models to predict high protein producing CHO cell clones.• Completed de novo assembly of DNA sequences of proteins using MEGAHIT, Flye. • Created heatmaps of Nanostring nCounter gene expression data using R. • Developed an R script that outputs an interactive visualization & regression of mutation frequency vs time data.• Documented code in company GitLab repositories.

• Published discovery that myxozoans (parasitic jellyfish) lack cytosine DNA methylation, by analyzing Whole Genome Bisulfite Sequence (WGBS) data (DOI: http://dx.doi.org/10.1093/molbev/msaa214).

• Investigated the Endoplasmic Reticulum in D. melanogaster embryos, using molecular biology & fluorescence microscopy.

• Investigated Kinesin-5 motor proteins in S. cerevisiae, using molecular biology, biochemistry, & fluorescence microscopy.