Ryan O'Neil

Ryan O'Neil Email and Phone Number

Bioinformatics Data Scientist @ California Department of Public Health
Ryan O'Neil's Location
New Canaan, Connecticut, United States, United States
Ryan O'Neil's Contact Details

Ryan O'Neil work email

Ryan O'Neil personal email

n/a
About Ryan O'Neil

I have 10+ years of experience as a bioinformation sequencing large-scale human, mouse, plant, and viral genomic data sets. During my PhD, I automated data processing pipelines, completed cross-sample comparisons of epigenetic profiles, and contributed to multiple interdisciplinary collaborations to investigate the various methods of generating pluripotent stem cells. I am excited to apply my expertise in bioinformatic research, visualization, and analysis in cutting-edge research groups.

Ryan O'Neil's Current Company Details
California Department of Public Health

California Department Of Public Health

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Bioinformatics Data Scientist
Ryan O'Neil Work Experience Details
  • California Department Of Public Health
    Bioinformatics Data Scientist
    California Department Of Public Health May 2021 - Present
    Sacramento, Ca, Us
    ● Improved data processing pipelines (Bash, Python) and explored genomic regions of interest (Docker,Bowtie2) for mpox as the lead bioinformatician on the Mpox Public Health Emergency Response team.● Constructed phylogenetic trees (Nextstrain) using WGS data and overlaid patient testimonialinformation to build transmission models for the California Sars-Cov-2 Outbreak Investigations team.● Developed a data processing pipeline (Bash, Python) to fulfill data availability requirements byuploading 500+ WGS samples to GISAID, NCBI BankIt, and NCBI SRA databases.● Presented Sars-Cov-2 WGS quality control metrics and novel variant introductions in monthlyCOVIDNet meetings involving 11+ Public Health Laboratories across the California state.
  • Salk Institute For Biological Studies
    Quantitative Researcher
    Salk Institute For Biological Studies Aug 2015 - Present
    La Jolla, Ca, Us
    ● Managed and automated multiple in-house data processing pipelines (Linux Shell/Python), performed cross-sample comparisons of epigenetic profiles, and filtered regions of interest (Python) to understand the relationship of artifacts remaining on reprogramed pluripotent stem cells to parental lines.● Analyzed and visualized DNA, RNA, methylation, and genomic structure data in Python and R for an investigation of a novel stem cell generation method.● Coordinated sample acquisition and logistics across 3 labs and over 30 samples and managed an interdisciplinary team of 6 stem cell specialists, RNA experts, and bioinformaticians.● Performed cell DNA extraction, PCR, and Illumina Hiseq sequencing to generate a whole genome bisulfite sequencing dataset (WGBS; 3-50 GBs).
  • Car Part Kings
    Junior Database Developer
    Car Part Kings Jul 2011 - Aug 2012
    ● Designed PHP and MySQL backend code to create a website search function for an online retailer. ● Managed a SQL database to inventory of over 1000 unique car parts.
  • Cornell University
    Teaching Assistant
    Cornell University Aug 2009 - Dec 2010
    Ithaca, Ny, Us
    Taught 28 weekly laboratory sessions on bioengineering topics (e.g., green energy development, culture growth design, and statistical modeling) for two semesters of Introduction to Computer Programming for Engineers in MATLAB.

Ryan O'Neil Education Details

  • Uc San Diego
    Uc San Diego
    Doctor Of Philosophy - Phd
  • Cornell University
    Cornell University
    Bioengineering And Biomedical Engineering

Frequently Asked Questions about Ryan O'Neil

What company does Ryan O'Neil work for?

Ryan O'Neil works for California Department Of Public Health

What is Ryan O'Neil's role at the current company?

Ryan O'Neil's current role is Bioinformatics Data Scientist.

What is Ryan O'Neil's email address?

Ryan O'Neil's email address is ro****@****alk.edu

What schools did Ryan O'Neil attend?

Ryan O'Neil attended Uc San Diego, Cornell University.

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